Table 1.

Comparison of F1 scores achieved by different pretrained models on benchmark datasets

Tasks	Species	PlantRNA-FM	RNABERT	cdsBERT	DNABERT-2	NT	ESM2
RNA genic region annotation prediction	A. thaliana	0.974 ± 0.003	0.564 ± 0.002	0.254 ± 0.003	0.602 ± 0.001	0.635 ± 0.002	0.639 ± 0.008
	O. sativa	0.958 ± 0.006	0.532 ± 0.002	0.252 ± 0.017	0.580 ± 0.015	0.635 ± 0.013	0.665 ± 0.010
RNA TE prediction	A. thaliana	0.735 ± 0.003	0.375 ± 0.045	0.359 ± 0.010	0.346 ± 0.001	0.637 ± 0.010	0.617 ± 0.008
	O. sativa	0.737 ± 0.004	0.595 ± 0.01	0.359 ± 0.010	0.627 ± 0.012	0.631 ± 0.020	0.649 ± 0.011