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. 2024 Dec 18;55:169. doi: 10.1186/s13567-024-01415-6

Figure 4.

Figure 4

Screening of immunodominant epitopes of H5N1 AIV-specific CD8T cells. A RT-PCR analysis of IFN-γ gene expression in B1 haplotype memory PBMCs stimulated with peptide pools. The data were collected from three replicates of three biological samples. B RT-PCR analysis of IFN-γ gene expression in B1 haplotype memory PBMCs with individual 9-mer peptide stimulation from positive peptide pools. The results are presented as the means ± SEM, and paired t tests were used for statistical comparisons. *P < 0.05, **P < 0.01, ***P < 0.001. C Conservation of the sequences between circulating strains for the positive peptides. The Global Initiative of Sharing All Influenza Data (GISAID) (gisaid.org) was used with the search criteria set as Asia, 2019 to 2024, NA/NP/M/PB1/PA/NS1, and H5N1/H5N6/H5N8/H7N9/H9N2. Protein sequences were aligned with the MUSCLE algorithm. The frequency of mutation was determined. The protein sequences of influenza A (H5N1-H5N6-H5N8-H7N9-H9N2) viruses are represented by various colored bars, and the number above the bars indicates the number of virus strains.