Table 1.
Statistics of sequencing data used in the genome assemblies of Abeliophyllum distichum and Forsythia ovata.
| Type | Species | Library | Platform | Insert size (bp) | Raw data (Gb) | Clean data (Gb) | Sequence coverage (×)a |
|---|---|---|---|---|---|---|---|
| Genome | A. distichum | Illumina | HiSeqX | 550 | 98.41 | 83.45 | 98.76 |
| Hi-C | HiSeqX | 350 to 1,000 | − | 40.70 | 48.16 | ||
| PacBio | Sequel | 20,000 | − | 98.14 | 116.14 | ||
| F. ovata | Illumina | NovaSeq6000 | 550 | 104.74 | 96.32 | 102.79 | |
| Hi-C | HiSeqX | 350 to 1,000 | − | 56.09 | 59.86 | ||
| PacBio | Sequel | 20,000 | − | 84.38 | 90.05 | ||
| Methylome | A. distichum | BSb | HiSeq2000 | 200 | 53.32 | 45.79 | 54.19 |
| F. ovata | BSb | HiSeq2000 | 200 | 53.40 | 45.89 | 48.98 | |
| Transcriptome | A. distichum | mRNA-seqc | NextSeq | 350 | 74.40 | 53.85 | 63.73 |
| F. ovata | mRNA-seqc | NovaSeq6000 | 350 | 65.60 | 59.14 | 63.11 |
aSequence coverage was calculated using the genome sizes of A. distichum and F. ovata, measured at 844.58 and 937.12 Mb, respectively.
bBS, bisulfite sequencing.
cmRNA-seq, mRNA-sequencing.