Table 1.
Transcriptomic studies from Amaryllidoideae species
| Species | Reference | Raw data | Assembly | Tissue | Developmental stage | Metabolomics |
|---|---|---|---|---|---|---|
| Amaryllis belladonna | One Thousand Plant Transcriptomes Initiative (2019) | ERR2040723 | LDMEa | Stem or leaf | NA | NA |
| Clivia miniata | Q.M. Wang et al. (2018) | PRJNA480383 | NA | Leaf | Mature striped plants, young leaves | NA |
| Y. Li et al. (2022) | PRJNA813401 | NA | Fruit peel, flower, leaf | NA | Anthocyanins, flavonoids, terpenes | |
| Crinum×powellii | Koirala et al. (2023) | PRJNA962562 | Koirala et al. (2023) | Leaf, bulb, basal plate, root, callus | Undifferentiated callus and 4-week-old plants | AA precursors and AAs |
| Galanthus elwesii | Kilgore et al. (2016a) | PRJNA306697 | b | Leaf, bulb, inflorescence | Adult, blooming | Galanthamine |
| G. sp. MBK-2015 | Kilgore et al. (2016a) | PRJNA306273 | b | Leaf, bulb, inflorescence | Adult, blooming | Galanthamine |
| Hippeastrum hybrid cultivar | X. Li et al. (2022) | PRJNA608969 | NA | Stamen | 3-year-old plants, blooming | NA |
| Y. Wang et al. (2018) | PRJNA322243 | NA | Flower | NA | NA | |
| H. vittatum | – | PRJNA862291 | NA | Bud | – | |
| Leucojum aestivum | Tousignant et al. (2022) | PRJNA720900 | NA | Bulb | Dormant | AAs |
| Lycoris aurea | Wang et al. (2013) | PRJNA188333 | NA | Stem, flower, leaf | Bud, blooming, wilting | NA |
| Ren et al. (2022) | PRJNA574869c PRJNA579847c |
NA | Bulb | Cross-cut bulb to bulblet formation | Untargeted metabolomics, sugar content, JA, ABA, and ethylene | |
| L. chinensis | F. Zhang et al. (2022) | PRJNA847051 | NA | Shoot apical meristem | 1- to 4-year-old bulbs | NA |
| L. incarnata | – | PRJNA639315 | NA | Bulb | Vegetative stage | NA |
| L. longituba | F. Zhang et al. (2022) | PRJNA490415 | NA | Tepal | Small, medium, and opening bud | Floral volatile organic compounds, anthocyanins |
| Li et al. (2020) | PRJNA590043 | NA | Bud, leaf, root | 3 years old | Galanthamine | |
| Li et al. (2021) | PRJNA720237c | NA | Seedling | 7 d old | AA precursors and AAs | |
| L. radiata | N. Wang et al. (2021) | PRJCA006232d | NA | Petal | Flowering | Protoanthocyanidins and anthocyanins |
| Park et al. (2019) | NA | PRJNA529664 | Bud, leaf, root | NA | Primary metabolites and galanthamine | |
| Xu et al. (2020) | PRJNA574731 | NA | Bulb | Dormancy, competence, bud initiation, bud enlargement, bulblet emergence and bulblet development | Hormones, starch, and soluble sugar | |
| L. sprengeri | F. Yang et al. (2021) | PRJNA714286 | NA | Petal | Adult, blooming | Anthocyanins, flavonoid-biosynthesis related metabolites, and brassinolide |
| Ren et al. (2022) | PRJNA574869c PRJNA579847c |
NA | Bulb | Cross-cut bulb to bulblet formation | Untargeted metabolomics, sugar content, JA, ABA, and ethylene | |
| Narcissus papyraceus | Hotchandani et al. (2019) | PRJNA407433 | NA | Bulb | Dormant | Heterocyclic compounds, lycorine |
| N. pseudonarcissus | Ferdausi et al. (2021); Pulman (2014) | PRJNA264603 | NA | Basal plate and callus | 4 months after planting | NA |
| Singh and Desgagné-Penix (2017) | PRJNA392294 | NA | Bulb | Adult, blooming | AAs, galanthamine | |
| X. Li et al. (2018) | PRJNA497707 | NA | Perianth and corona | S4 flowering stage | Carotenoids | |
| N. aff. pseudonarcissus | Kilgore et al. (2014) | PRJNA301357 | b | Leaf, bulb, inflorescence | Adult, blooming | Galanthamine |
| N. tazetta | Yang et al. (2023) | PRJNA891931c | NA | NA | NA | Flavonoids, proanthocyanins, and anthocyanin |
| Y. Zhang et al. (2022) | PRJNA855612 | NA | Corolla and tepal | From bud to decay | Carotenoid and flavonoid content | |
| – | PRJNA296436 | NA | Yellow petal and yellow corona | Early flowering | ||
| Ren et al. (2017) | PRJNA340092 PRJNA340090 |
NA | Tepal | 5, 12, and 20 d after planting | Chlorophyll, carotenoids, and flavonoids | |
| G. Wang et al. (2018) | PRJNA387061 | NA | Basal plate | 3-year-old bulbs | Flavonols | |
| Yan-Hong et al. (2019) | PRJNA487120 | NA | Bulb | 3-year-old bulbs | NA | |
| He et al. (2020a, b) | PRJNA523125 | GSE126727 | Corolla and petal | Early flowering and full bloom | NA | |
| J. Yang et al. (2021) | SUB10083597c PRJNA750844 |
NA | Corona and tepal | Adult, blooming | Flavonoids, carotenoids, chlorophyll, and volatile organic components | |
| N. viridiflorus | One Thousand Plant Transcriptomes Initiative (2019) | ERR2040725 ERR2040724 |
IQYY, XEUV, TRRQa | Young vegetative tissue and flower | NA | NA |
| Phycella aff. cyrtanthoides | One Thousand Plant Transcriptomes Initiative (2019) | ERR3487375 | DMINa | Young vegetative tissue | NA | NA |
| Rhodophiala pratensis | One Thousand Plant Transcriptomes Initiative (2019) | ERR2040726 | JDTYa | Young vegetative tissue | NA | NA |
| Traubia modesta | One Thousand Plant Transcriptomes Initiative (2019) | ERR2040727 | ZKPFa | Young vegetative tissue | NA | NA |
| Zephyranthes candida | Y. Zhang et al. (2022) | PRJNA796382 | NA | Flower and flower stalk | Adult, blooming | NA |
| Z. treatiae | One Thousand Plant Transcriptomes Initiative (2019) | ERR2040728 | DPFWa | Young vegetative tissue | NA | NA |
The accession number of the raw data, the assembly accession, the tissue and developmental stage sampled, and the metabolites quantified are included.
AA, Amaryllidaceae alkaloid; NA, not available
a Assembly available at GigaScience Database (http://gigadb.org/dataset/100627).
b Assembly available in the MedPlant RNASeq Database (https://medplantrnaseq.org).
c The wrong acces sion number was provided.
d Data available on https://ngdc.cncb.ac.cn/.