Table 2.
Primers used in this study
| slrP_FW | GACGACTGTGACCTCTTATTTAAA | This study | Genotyping of slrP deletion |
| slrP_RV | AAAAAGCGCTACAGGCGTTGG | This study | Genotyping of slrP deletion |
| sopD2_FW | TTTCTAAACCCAGGCTGATTCAA | This study | Genotyping of sopD2 deletion |
| sopD2_RV | CCATGTAATGGGTTTGACTGAAA | This study | Genotyping of sopD2 deletion |
| gtgA_FW | TAGGCAATGAGTCCGGCCA | This study | Genotyping of gtgA deletion |
| gtgA_RV | CCTTGGCAGGGCTCGCT | This study | Genotyping of gtgA deletion |
| sseI_FW | TATTGTGAAATTAAGACCAGGAAGA | This study | Genotyping of sseI deletion |
| sseI_RV | GATGTTGTTGTCGATCTCCAC | This study | Genotyping of sseI deletion |
| gtgE_FW | ATGCGACAATACAATAAAAACATATCA | This study | Genotyping of gtgE deletion |
| gtgE_RV | AGCTTCCCCGTAGGAAATTGA | This study | Genotyping of gtgE deletion |
| pipA_FW | GTTGGCTTTGTCTGAATCATAGC | This study | Genotyping of pipA deletion |
| pipA_RV | GCCCCTTTGTTTTTTTAGGCG | This study | Genotyping of pipA deletion |
| pipB_FW | CAAAGCTCTAAATACAAAAATCACC | This study | Genotyping of pipB deletion |
| pipB_RV | TGAAACTTAGGGGCGGGGTT | This study | Genotyping of pipB deletion |
| sifA_FW | GCGCCCGCAGTTGAGATAAA | This study | Genotyping of sifA deletion |
| sifA_RV | GCCTGGCAAGAGGTTACTCA | This study | Genotyping of sifA deletion |
| sseF_FW | CGGATGCCTCATGGAGTGA | This study | Genotyping of sseF deletion |
| sseG_RV | CATCGTAAGGATACTGGCAACA | This study | Genotyping of sseG deletion |
| srgE_FW | ATGAGTTATTGACCACTGAATTTTCT | This study | Genotyping of srgE deletion |
| srgE_RV | GAGTAACTTTACGACAATTGCTTC | This study | Genotyping of srgE deletion |
| steA_FW | CTGAAAATGTATGCCTTTGAGCAA | This study | Genotyping of steA deletion |
| steA_RV | TTCTGAGAATCTCTTTGCGACAC | This study | Genotyping of steA deletion |
| sifB_FW | AAAGCAAAAATCAGGTGTTTCACC | This study | Genotyping of sifB deletion |
| sifB_RV | TTCGTTCCATAGTAAATCCATTATTC | This study | Genotyping of sifB deletion |
| steB_FW | CTTAGTCAATGTGGACAAAAAATCAAA | This study | Genotyping of steB deletion |
| steB_RV | ACGGCAGAACTTCCCATAGC | This study | Genotyping of steB deletion |
| sseJ_FW | AAGAAGCGTAATTCCATATACACC | This study | Genotyping of sseJ deletion |
| sseJ_RV | CAATCGGCAGCAAAGATAGCAT | This study | Genotyping of sseJ deletion |
| steC_FW | CAAACTGGCAAATCAAAGAGTCT | This study | Genotyping of steC deletion |
| steC_RV | TTGCATCTCCGCTACAGGCT | This study | Genotyping of steC deletion |
| sseK3_FW | TTAAGCCCCCCCTAACCAAGTAAAAACTATCGTTTCAGAT | This study | Genotyping of sseK3 deletion |
| sseK3_RV | TTCACCACGGCACGCAGGTCATCCAATTTAATGGAGGTAC | This study | Genotyping of sseK3 deletion |
| sseK2_FW | GTCGGACTCAGGACTTAGCATTGTGACGTTAACGTTTAAA | This study | Genotyping of sseK2 deletion |
| sseK2_RV | TGAAAGTTCTGTAGAGAAACTTGAATGTGAAATTGAGGTA | This study | Genotyping of sseK2 deletion |
| steD_FW | CCTATTTAGATGATGGCTTAGCG | This study | Genotyping of steD deletion |
| steD_RV | CTATATAAGTCATAAGCCTCTGGT | This study | Genotyping of steD deletion |
| sspH2_FW | TCTGCACCTTCTGAAGCCC | This study | Genotyping of sspH2 deletion |
| sspH2_RV | GTCATCCGGATATTTCACCTGT | This study | Genotyping of sspH2 deletion |
| sseL_FW | GCAATATCTCTTGTATCGACGC | This study | Genotyping of sseL deletion |
| sseL_RV | GACAGCAGGTTGGCGATGT | This study | Genotyping of sseL deletion |
| gogB_FW | TAGGTTCTAAATCTTGCCTGAATG | This study | Genotyping of gogB deletion |
| gogB_RV | AAGTTGGCATGTAGTCTAGAGTTA | This study | Genotyping of gogB deletion |
| steE_FW | TCTTGTTGTGATGAGATTCGTATATA | This study | Genotyping of steE deletion |
| steE_RV | AAATCACACAATCCGGACTGAG | This study | Genotyping of steE deletion |
| gogA_FW | GCTTTTAGCTTAATTGATTGCGTG | This study | Genotyping of gogA deletion |
| gogA_RV | ATTCCATTTGAGGCTGCCATTC | This study | Genotyping of gogA deletion |
| pipB2_FW | TTATTATGTAACCAGACGTAAAGGG | This study | Genotyping of pipB2 deletion |
| pipB2_RV | TTTTACCGTCGCATACTCCTGT | This study | Genotyping of pipB2 deletion |
| cigR_FW | ATAAGCTGCTGTTGGCGAGC | This study | Genotyping of cigR deletion |
| cigR_RV | CGTAGCGAGTCAAACCTCAC | This study | Genotyping of cigR deletion |
| sseK1_FW | CTGGCAGGGTATTTATGTATCCTCCGGTTAATGCTTAGTT | This study | Genotyping of sseK1 deletion |
| sseK1_RV | AATGCCGTATATCTCCGTTCTGAACAGCACTGCGATTTTA | This study | Genotyping of sseK1 deletion |
| srfJ_FW | GACTGGAAACAGCGCTTTATTGATGCC | This study | Genotyping of srfJ deletion |
| srfJ_RV | GTCGCTTCATTAAATCCCAGCT | This study | Genotyping of srfJ deletion |
| spvR_FW | CATAATCCTATCCAGTAACCCC | This study | Genotyping of spvB deletion |
| spvR_RV | GGTGAACTACCGCTATGGAG | This study | Genotyping of spvB deletion |
| pipB_red_FW | CCTATAAGGAGTCGGCTCACTTCCATAAGAAGGAATCAAAATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of pipB |
| pipB_red_RV | TGTTTGAATACTTCTTGTTTATAAAATCCCTTTATCTCGATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of pipB |
| srgE red F W | ACTACACTGGGAAATCGTTGCGTGGTGGTTCCGGAGATAGATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of srgE |
| srgE_red_RV | AATGCCAGACTTCCGCTACCAGACGGTATACACAGTATTATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of srgE |
| sseJ_red_FW | TTATTTGCTAAAGCGTGTTTAATAAAGTAAGGAGGACACTATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sseJ |
| sseJ_red_RV | AGCTGTGTTTTGCTCAAGGCGTACCGCAGCCGATGGAACTTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sseJ |
| gtgA_red_FW | AATGTTAATTCCATGTAATAAAAAGGATGTGTAACTCATCATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of gtgA |
| gtgA_red_RV | GTGTTGTAGCATCGTGGGATTTTGCATTTTTTGATGAGTGTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of gtgA |
| gtgE_red_FW | TATAATTACATTAACAAAATTACTATTCGGCGAGTATATTATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of gtgE |
| gtgE_red_RV | AATTATCTTGGTAAAGGTTAACTATCATAAAATGGTACACTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of gtgE |
| sseL red F W | ATTGAGCATACCGCAATTTCACAGCTTATATACAGAAGAGATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sseL |
| sseL_red_RV | AGGATAAGAGCCTAATGGGATAGGCTCTAAGTACTCACCATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sseL |
| gogB_red_FW | ATTGAAAAAGCGCATGAAAATAGGATTCCAACCAGCCATAATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of gogB |
| gogB_red_RV | GCTCTATATATAAATATATTAATTGCATATTTTTTTAAAGTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of gogB |
| gogA_red_FW | AATGTTAATTCCATGTAATAAAAAGGATGTGTAACTCATCATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of gogA |
| gogA_red_RV | GTGTTGTAGCATCGTGGGATTTTGCATTTTTTGATGAGTGTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of gogA |
| sseFsseG_re_d_FW | AATGGTTGATACTCTTATTGCTTAAATAACAGAACGAAATATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sseFsseG |
| sseFsseG_red_RV | TTTAGAAAGCAATGAACATCCGGTATATACCTGAAAACGATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sseFsseG |
| sspH2_red_FW | CGGACAGATACTATATGTAAATTTATAAAGGTTTTTTGTTATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sspH2 |
| sspH2_red_RV | GGAATATCTTTGTCGCACCGCACCTCATTCACCTGGTGCATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sspH2 |
| sopD2_red_FW | TTGGATCTTGCTTTCGCGGTAAATAATCAAGGGAGTTATTATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sopD2 |
| sopD2_red_RV | AAAAAAGGCTCCATATCAGTGGGGCCTTTTTAATGACTTTTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sopD2 |
| steA_red_FW | GACATATAAAGCTATTGAGCAAAATTTGAAGGAGTAGGATATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of steA |
| steA_red_RV | AGTCTGATTTCTAACAAAACTGGCTAAACATAAACGCTTTTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of steA |
| steB_red_FW | TCATTATTGTTAGTTTGAAATCAATCTCAGGTAATAATCCATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of steB |
| steB_red_RV | CTGTGGAATAGCAATGCCGGGAAGGACATGGCATGACACTTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of steB |
| steC_red_FW | TTGCATGTGTATTATAATAAATTTTCAGAGGATGAGACATATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of steC |
| steC_red_RV | TGTGCCCCCGGCGATTCGCAGAAAAGAACGGAACTAAATGTGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of steC |
| sifB_red_FW | CCAGTAATGAAGTATCATATAATCACTTGTGGTCTACATTATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of sifB |
| sifB_red_RV | ATTGCCAGGGGATTGTAAATCCATACTATTTATGGTGTGATGTGTAGGCTGGAGCTGCTTC | This study | Lambda red replacement of sifB |
| slrP_red_FW | TCTGTTACTTTAGGTTACGTTCAGATCAGGTAGGGAAAATATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of slrP |
| slrP_red_RV | GTAAACAGGCTCTCTCCCTCTTCTGATAAACTGCGTTCAGATATGAATATCCTCCTTAGTTCC | This study | Lambda red replacement of slrP |
| BamHI_sopD2_FW | ATTTGGATCCACAGGCGCGAAACCAGTC | This study | Complementat ion insert for sopD2 with restriction sites |
| NotI_sopD2_RV | ATTTGCGGCCGCATCAAAGGCGATGTTCTGAACTT | This study | Complementat ion insert for sopD2 with restriction sites |
| BamHI_gtgE_FW | ATTTGGATCCTTCGGCATCGAGGTCAAAGG | This study | Complementat ion insert for gtgE with restriction sites |