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[Preprint]. 2024 Dec 12:2024.12.11.627970. [Version 1] doi: 10.1101/2024.12.11.627970

Figure 5: RNA encodes physical properties via disparate free energy costs of conformational entropy penalties.

Figure 5:

Synonymous mutations are designed and introduced to the WT mRNA to generate RNAs with polarized ensemble diversity. The low ensemble diversity RNA monomer samples a class of structures very similar to each other (top, green), which limits RNA-RNA interactions in the dense phase, but as a result, minimizes conformational entropy costs upon condensation. The high ensemble diversity RNA monomer samples a class of structures that greatly diverge from each other (bottom, purple), which lead to mesh-like RNA-RNA interactions in the dense phase and a high conformational entropy cost upon condensation.