Table 2.
Valid, unique, novelty and FCD of sampling SMILES after training. We sampled 30,000 SMILES each time
Model | Valid | Unique@1 k | Unique@10 k | Novelty | FCD | |
---|---|---|---|---|---|---|
Test | TestSF | |||||
AAE | 0.881 | 1.000 | 0.995 | 0.995 | 8.573 | 9.117 |
CharRNN | 0.985 | 0.999 | 0.988 | 0.994 | 8.7564 | 8.952 |
VAE | 0.834 | 1.000 | 0.996 | 0.994 | 7.703 | 8.141 |
LatentGAN | 0.724 | 1.000 | 0.999 | 0.998 | 7.595 | 8.160 |
ORGAN | 0.609 | 0.996 | 0.994 | 0.999 | 39.800 | 41.158 |
GENiPPI-noninterface | 0.999 | 0.997 | 0.975 | 0.997 | 7.653 | 8.132 |
GENiPPI | 0.999 | 0.998 | 0.977 | 0.998 | 7.450 | 7.884 |