Skip to main content
. 2024 Dec 20;16:142. doi: 10.1186/s13321-024-00930-0

Table 2.

Valid, unique, novelty and FCD of sampling SMILES after training. We sampled 30,000 SMILES each time

Model Valid Unique@1 k Unique@10 k Novelty FCD
Test TestSF
AAE 0.881 1.000 0.995 0.995 8.573 9.117
CharRNN 0.985 0.999 0.988 0.994 8.7564 8.952
VAE 0.834 1.000 0.996 0.994 7.703 8.141
LatentGAN 0.724 1.000 0.999 0.998 7.595 8.160
ORGAN 0.609 0.996 0.994 0.999 39.800 41.158
GENiPPI-noninterface 0.999 0.997 0.975 0.997 7.653 8.132
GENiPPI 0.999 0.998 0.977 0.998 7.450 7.884