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. 2024 Dec 6;10(1):veae105. doi: 10.1093/ve/veae105

Table 1.

Datasets used in meta-analysis

Dataset Virus type Host Genome Traits Framework
1 Tomato spotted wilt virus Plant ssRNA Transmission vs. virus titer (Rotenberg et al. 2009) EoV
2 Tomato spotted wilt virus Plant ssRNA Transmission vs. virus titer (Rotenberg et al. 2009) EoV
3 Tomato spotted wilt virus Plant ssRNA Transmission vs. virus titer (Rotenberg et al. 2009) EoV
4 Tomato spotted wilt virus Plant ssRNA Transmission vs. virus titer (Rotenberg et al. 2009) EoV
5 Tomato spotted wilt virus Plant ssRNA Transmission vs. virus titer (Rotenberg et al. 2009) EoV
6 Cucumber mosaic virus Plant ssRNA Accumulation vs. infection (Sacrist´an and Garc´ıa-Arenal 2008) effects EoV
7 Cucumber mosaic virus Plant ssRNA Growth effects on original host (Sacrist´an and Garc´ıa-Arenal 2008) G/S
8 Cucumber mosaic virus Plant ssRNA Original hosts vs. diversification (Sacrist´an and Garc´ıa-Arenal 2008) G/S
9 Rice yellow mottle virus Plant ssRNA Virus titer vs. weight loss (Poulicard et al. 2010) EoV
10 Rice yellow mottle virus Plant ssRNA Virus titer vs. weight loss (Poulicard et al. 2010) EoV
11 Rice yellow mottle virus Plant ssRNA Virus titer vs. weight loss (Poulicard et al. 2010) EoV
12 Potato virus Y Plant ssRNA Virus aggressiveness vs. virus loss (Montarry et al. 2012) EoV
13 Potato virus Y Plant ssRNA Virus aggressiveness vs. virus loss (Montarry et al. 2012) EoV
14 Cauliflower mosaic virus Plant dsDNA Leaf reduction vs. transmission (Doumayrou et al. 2013) EoV
15 Cauliflower mosaic virus Plant dsDNA Viral accumulation vs. leaf reduction (Doumayrou et al. 2013) EoV
16 Cauliflower mosaic virus Plant dsDNA Viral reduction vs. transmission (Doumayrou et al. 2013) EoV
17 Cauliflower mosaic virus Plant dsDNA Accumulation vs. virulence (Doumayrou et al. 2013) EoV
18 Cauliflower mosaic virus Plant dsDNA Accumulation vs. virulence (Doumayrou et al. 2013) EoV
19 Cauliflower mosaic virus Plant dsDNA Accumulation vs. transmission (Doumayrou et al. 2013) EoV
20 Cauliflower mosaic virus Plant dsDNA Accumulation vs. transmission (Doumayrou et al. 2013) EoV
21 Cauliflower mosaic virus Plant dsDNA Viral load vs. transmission (Doumayrou et al. 2013) EoV
22 Cauliflower mosaic virus Plant dsDNA Viral load vs. transmission (Doumayrou et al. 2013) EoV
23 SpexNPV Animal dsDNA Speed to kill vs. virus yield (Redman et al. 2016) EoV
24 SpexNPV Animal dsDNA Speed to kill vs. virus yield (Redman et al. 2016) EoV
25 Cryphonectria hypovirus Fungi dsRNA Colony size vs. sporulation (Brusini et al. 2017) EoV
26 Cryphonectria hypovirus Fungi dsRNA Colony size vs. spore size (Brusini et al. 2017) EoV
27 Cryphonectria hypovirus Fungi dsRNA Spore size vs. sporulation (Brusini et al. 2017) EoV
28 West Nile virus Animal ssRNA Attachment rate vs. alternating host (Deardorff et al. 2011) EoV
29 West Nile virus Animal ssRNA Survival vs. viral load (Ciota et al. 2013) EoV
30 Vesicular stomatitis virus Animal ssRNA Fitness vs. transmission time (Elena 2001) G/S
31 Vesicular stomatitis virus Animal ssRNA Fitness vs. transmission time (Elena 2001) G/S
32 Vesicular stomatitis virus Animal ssRNA Fitness vs. transmission time (Elena 2001) G/S
33 Vesicular stomatitis virus Animal ssRNA Fitness vs. transmission time (Elena 2001) G/S
34 Vesicular stomatitis virus Animal ssRNA Fecundity vs. survival (Brandon Ogbunugafor et al. 2013) LHT
35 Vesicular stomatitis virus Animal ssRNA Fecundity vs. survival (Brandon Ogbunugafor et al. 2013) LHT
36 Vesicular stomatitis virus Animal ssRNA Fitness vs. alternating hosts (Turner and Elena 2000) LHT
37 Vesicular stomatitis virus Animal ssRNA Survival vs. reproduction (Wasik et al. 2015) LHT
38 Vesicular stomatitis virus Animal ssRNA Generalists vs specialists (Alto and Turner 2010) G/S
39 Vesicular stomatitis virus Animal ssRNA Generalists vs specialists (Alto and Turner 2010) G/S
40 Vesicular stomatitis virus Animal ssRNA Generalists vs specialists (Alto and Turner 2010) G/S
41 Vesicular stomatitis virus Animal ssRNA Generalists vs specialists (Alto and Turner 2010) G/S
42 Vesicular stomatitis virus Animal ssRNA Robustness vs. thermostability (Presloid et al. 2016) LHT
43 Vesicular stomatitis virus Animal ssRNA Robustness vs. thermostability (Presloid et al. 2016) LHT
44 Coliphages Bacteria NA Multiplication rate vs. decay rate (Paepe et al. 2006) LHT
45 ΦX174 Bacteria ssDNA Growth rates vs. attachment rates (Crill et al. 2000) EoV
46 Qβ Bacteria ssRNA Adsorption rate vs. infectivity (Garc´ıa-Villada and Drake 2013) EoV
47 Φ6 Bacteria dsRNA Fitness vs. attachment rate (Ford et al. 2014) EoV
48 Φ6 Bacteria dsRNA Fitness vs. host range (Ferris et al. 2007) G/S
49 Φ6 Bacteria dsRNA Fitness vs. host range (Ferris et al. 2007) G/S
50 Φ6 Bacteria dsRNA Fitness vs. host range (Ferris et al. 2007) G/S
51 Qβ Bacteria ssRNA Growth vs. fitness (Domingo-Calap et al. 2010) LHT
52 T7 Bacteria dsDNA Adsorption rate vs. infectivity (Heineman et al. 2012) EoV
53 P5 Bacteria dsDNA Mortality vs. reproduction rate (Dessau et al. 2012) LHT
54 ID11 Bacteria ssDNA Fitness vs. binding affinity (Lee et al. 2011) EoV
55 ID11 Bacteria ssDNA Fitness vs. decay rate (Lee et al. 2011) LHT
56 Qβ Bacteria ssDNA Fitness vs. thermal adaptation (L´azaro et al. 2018) G/S
57 Qβ Bacteria ssDNA Fitness vs. thermal adaptation (L´azaro et al. 2018) G/S
58 Qβ Bacteria ssDNA Fitness vs. thermal adaptation (L´azaro et al. 2018) G/S
59 Φ6 Bacteria dsRNA Generalists vs. specialists (Bono et al. 2015) G/S
60 Φ6 Bacteria dsRNA Generalists vs. specialists (Bono et al. 2015) G/S

Datasets were not grouped even if they infect the same host or w from the same study. They were analyzed individually and restricted to one framework: evolution of virulence life history theory (LHT), and generalism–specialism dichotomy (G/S) (see “Methods” section). We note that the “Host does not provide any specific detail on species or subtaxa.” The hosts used in each study may or may be commonly associated with that virus in nature. We urge interested readers to consult individual those particulars.