Table 1. Properties of DNA molecules used.
DNA | N, bp* | Lc, μm† | Rg, nm‡ | Nb,§ | τ1, ms¶ | Δt, ms∥ |
---|---|---|---|---|---|---|
φX174** | 5,386 | 1.8 | 175 | 1.4 | 2.6 | 21 |
pΔ | 8,000 | 2.7 | 213 | 2.0 | 4.8 | 21 |
T7/BstEII | 20,065/19,871†† | 6.8 | 336 | 5.0 | 19 | 26 |
T7 | 39,936 | 13.6 | 476 | 10.1 | 53 | 27 |
T4 | 166,000 | 56.4 | 970 | 41.8 | 450 | 52 |
Degree of polymerization.
Contour length; Lc = 0.34 nm·N.
Radius of gyration; Rg = (PLc/3)1/2 with a persistence length of P = 50 nm.
Number of DNA blobs in nanotube of radius R = 150 nm. Nb = N/n, where n = 3,970 is the number of bp per blob in a cylindrical tube, obtained from the condition that the blob radius-of-gyration equals the tube radius.
Longest relaxation time of unconfined polymer. Confinement will increase the relaxation time as described in the text.
Experimental average transit time across detection volume.
Linear form obtained by restriction cleavage of circular form by Eco 1471. The uncleaved sample contained >90% nicked circular form.
Two fragments in equimolar amounts obtained by restriction cleavage of T7 DNA by BstEII. Calculations and plots are based on the mean N.