Table 7.
Statistics of gene structure annotation of the S. pavo genome.
| Type | Gene Set | Number | Average transcript length (bp) | Average CDS length (bp) | Average exons per gene (bp) | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|---|
| De novo | Augustus | 36,282 | 8,342.07 | 1,239.89 | 6.63 | 187.10 | 1,262.19 |
| SNAP | 49,111 | 20,417.64 | 1,196.63 | 7.91 | 151.23 | 2,780.65 | |
| Homolog | Aoce | 20,658 | 13,651.11 | 1,770.44 | 9.91 | 178.71 | 1,333.88 |
| Olat | 19,859 | 13,193.08 | 1,727.30 | 9.62 | 179.59 | 1,330.43 | |
| Mcep | 20,223 | 13,803.83 | 1,771.45 | 9.94 | 178.27 | 1,346.36 | |
| Sfas | 21,074 | 11,679.72 | 1,496.00 | 8.53 | 175.48 | 1,353.30 | |
| Gwil | 19,439 | 13,385.95 | 1,725.71 | 9.72 | 177.49 | 1,336.76 | |
| RNAseq | transcripts | 46,357 | 21,938.85 | 3,670.60 | 12.27 | 299.12 | 1,620.80 |
| PASA | 42,219 | 9,513.77 | 1,232.76 | 7.47 | 165.04 | 1,280.03 | |
| EVM | EVM | 32,236 | 11,024.55 | 1,367.41 | 7.64 | 179.04 | 1,454.91 |
| PASA | PASA | 31,902 | 11,508.10 | 1,392.88 | 7.76 | 179.59 | 1,497.27 |
| Final set | Final | 24,008 | 14,092.38 | 1,641.78 | 9.47 | 173.35 | 1,469.85 |