Skip to main content
. 2024 Dec 11;14:1476066. doi: 10.3389/fcimb.2024.1476066

Table 2.

Details of the taxa used in the phylogenetic analyses.

Taxa Strains Substrate Country Lifestyles GenBank Accession Numbers
LSU ITS tub2 tef1-α
Apiospora acutiapica KUMCC 20-0210T Bambusa bambos China Saprobe MT946339 MT946343 MT947366 MT947360
Ap. adinandrae SAUCC 1282B-1T Adinandra glischroloma China – OR739572 OR739431 OR757128 OR753448
Ap. agari KUC21333T Agarum cribrosum Republic of Korea – MH498440 MH498520 MH498478 MH544663
Ap. aquatica S 642T Submerged wood China Saprobe MK835806 MK828608 NA NA
Ap. arctoscopi KUC21331T Egg of Arctoscopus japonicus Republic of Korea – MH498449 MH498529 MH498487 MN868918
Ap. armeniaca SAUCC DL1831T Prunus armeniaca China Endophyte OQ615269 OQ592540 OQ613285 OQ613313
Ap. armeniaca SAUCC DL1844 Prunus armeniaca China Endophyte OQ615268 OQ592539 OQ613284 OQ613312
Ap. arctoscopi KUC21331T Egg of Arctoscopus japonicus Republic of Korea – MH498449 MH498529 MH498487 MN868918
Ap. arundinis GZCC 20-0116T Aspergillus flavus sclerotium USA Saprobe/endophyte MW478899 MW481720 MW522968 MW522952
Ap. aseptata KUNCC 23-14169T Dicranopteris pedata China Endophyte OR590335 OR590341 OR634943 OR634949
Ap. aurea CBS 244.83T Air Spain – KF144935 AB220251 KF144981 KF145023
Ap. balearica CBS 145129T Undetermined Poaceae Spain Saprobe MK014836 MK014869 MK017975 NA
Ap. babylonica SAUCC DL1841T Salix babylonica China Endophyte OQ615267 OQ592538 OQ613283 OQ613311
Ap. babylonica SAUCC DL1864 Salix babylonica China Endophyte OQ615266 OQ592537 OQ613282 OQ613310
Ap. bambusicola MFLUCC 20-0144T Culms of Schizostachyum
brachycladum 		Thailand Saprobe MW173087 MW173030 NA MW183262
Ap. bawanglingensis SAUCC BW0444T Indocalamus longiauritus China – OR739570 OR739429 OR757126 OR753446
Ap. biserialis CGMCC 3.20135T Bamboo China Saprobe MW478885 MW481708 MW522955 MW522938
Ap. camelliaesinensis LC 5007T Camellia sinensis China Endophyte KY494780 KY494704 KY705173 KY705103
Ap. cannae ZHKUCC 22-0127 Canna China Saprobe OR164948 NA OR166321 OR166285
Ap. chiangraiense MFLUCC 21-0053T Dead culms of bamboo Thailand Saprobe MZ542524 MZ542520 MZ546409 NA
Ap. chromolaenae MFLUCC 17-1505T Chromolaena odorata Thailand Saprobe MT214436 MT214342 NA NA
Ap. cordylinae GUCC 10027T Cordyline fruticosa China – NA MT040106 MT040148 MT040127
Ap. coryli CFCC 58978T Corylus yunnanensis China Saprobe OR133586 OR125564 OR139978 OR139974
Ap. cyclobalanopsidis CGMCC 3.20136T Cyclobalanopsidis glauca China Saprobe MW478892 MW481713 MW522962 MW522945
Ap. dehongensis GMBCC1011T Bamboo China Saprobe PQ111483 PQ111494 PQ463974 PQ464025
Ap. dehongensis GMBCC1012 Bamboo China Saprobe PQ111484 PQ111495 PQ463975 PQ464026
Ap. dematiacea KUNCC 23-14202T Dicranopteris ampla China Endophyte OR590339 OR590346 OR634948 OR634953
Ap. descalsii CBS 145130T Ampelodesmos mauritanicus Spain Saprobe MK014837 MK014870 MK017976 NA
Ap. dichotomanthi LC 4950T Dichotomanthes tristaniicarpa China Saprobe/
endophyte		 KY494773 KY494697 KY705167 KY705096
Ap. dicranopteridis KUNCC 23-14171 Dicranopteris pedata China Endophyte OR590336 OR590342 OR634944 OR634950
Ap. dongyingensis SAUCC 0302T On diseased leaves of bamboo China – OP572424 OP563375 OP573270 OP573264
Ap. elliptica ZHKUCC 22-0131 On dead stem of unidentified plant China Saprobe OR164952 NA OR166323 OR166284
Ap. endophytica ZHKUCC 23-0006T Wurfbainia villosa China Endophyte OQ587984 OQ587996 OQ586075 OQ586062
Ap. esporlensis CBS 145136T Phyllostachys aurea Spain Saprobe MK014845 MK014878 MK017983 NA
Ap. euphorbiae IMI 285638b Bambusa sp. Bangladesh Saprobe AB220335 AB220241 AB220288 NA
Ap. fermenti KUC 21289T Seaweed Republic of Korea – MF615213 MF615226 MF615231 MH544667
Ap. fujianensis CGMCC 3.25647T Diseased bamboo leaves China – PP159034 PP159026 PP488470 PP488454
Ap. fujianensis CGMCC 3.25648 Diseased bamboo leaves China – PP159035 PP159027 PP488471 PP488455
Ap. fuzhouensis CGMCC 3.25649T Diseased bamboo leaves China – PP159036 PP159028 PP488472 PP488456
Ap. fuzhouensis CGMCC 3.25650 Diseased bamboo leaves China – PP159037 PP159028 PP488473 PP488457
Ap. gaoyouensis CFCC 52301T Phragmites australis China Saprobe NA MH197124 MH236789 MH236793
Ap. garethjonesii KUMCC 16-0202T Dead culms of bamboo China Saprobe KY356091 KY356086 NA NA
Ap. gelatinosa HKAS 11962T Bamboo China Saprobe MW478888 MW481706 MW522958 MW522941
Ap. globosa KUNCC 23-14210T Dicranopteris linearis China Endophyte OR590340 OR590347 NA OR634954
Ap. globosa GMBCC1021 Bamboo China Saprobe PQ111491 PQ111502 NA PQ464027
Ap. gongcheniae YNE00465T Living stems of Oryza meyeriana
subsp. granulata 		China Endophyte PP033102 PP033259 PP034691 PP034683
Ap. gongcheniae YNE00565 Living stems of Oryza meyeriana
subsp. granulata 		China Endophyte PP033103 PP0332560 PP034692 PP034684
Ap.guangdongensis ZHKUCC 23-0004T Wurfbainia villosa China Endophyte OQ587982 OQ587994 OQ586073 OQ586060
Ap. guangdongensis GMBCC1022 Bamboo China Saprobe PQ111485 PQ111496 PQ463976 PQ464020
Ap. guangdongensis GMBCC1023 Bamboo China Saprobe PQ111486 PQ111497 PQ463977 PQ464021
Ap. guiyangensis HKAS 102403T Unidentified grass China Saprobe MW240577 MW240647 MW775604 NA
Ap. guizhouensis LC 5322T Air in karst cave China Endophyte KY494785 KY494709 KY705178 KY705108
Ap. guizhouensis GZCC 20–0114 bamboo – MW478895 MW481716 MW522964 MW522948
Ap. hainanensis SAUCC 1681T On diseased leaves of bamboo China Pathogen OP572422 OP563373 OP573268 OP573262
Ap. hispanica IMI 326877T Beach sand Spain Saprobe AB220336 AB220242 AB220289 NA
Ap. hydei CBS 114990T Culms of Bambusa
tuldoides 		China Saprobe/endophyte KF144936 KF144890 KF144982 KF145024
Ap. hyphopodii MFLUCC 15-0003T Bambusa tuldoides China Saprobe NA KR069110 NA NA
Ap. hyphopodii KUMCC 16-0201 Bambusa tuldoides China Saprobe KY356093 KY356088 NA NA
Ap. hysterina ICMP 6889T Bamboo New Zealand Saprobe MK014841 MK014874 MK017980 MK017951
Ap. iberica CBS 145137T Arundo donax Portugal Saprobe MK014846 MK014879 MK017984 NA
Ap. intestini CBS 135835T Gut of a grasshopper India Saprobe KR149063 KR011352 KR011350 KR011351
Ap. italica CBS 145138T Arundo donax Italy Saprobe MK014847 MK014880 MK017985 MK017956
Ap. jatrophae AMH 9557T Jatropha podagrica Italy Saprobe NA JQ246355 NA NA
Ap. jiangxiensis LC 4577T Maesa sp. China Endophyte KY494769 KY494693 KY705163 KY705092
Ap. jinanensis SAUCC DL1981T On diseased leaves of Bambusaceae sp. China Endophyte OQ615273 OQ592544 OQ613289 OQ613317
Ap. jinanensis SAUCC DL2000 On diseased leaves of Bambusaceae sp. China Endophyte OQ615272 OQ592543 OQ613288 OQ613316
Ap. jinghongensis GMB-W1013T Bamboo China Saprobe PQ140163 PQ140160 PQ463971 PQ464022
Ap. jinghongensis GMB-W1014 Bamboo China Saprobe PQ140164 PQ140161 PQ463972 PQ464023
Ap. kogelbergensis CBS 113333 K Dead culms of Restionaceae South Africa Saprobe KF144938 KF144892 KF144984 KF145026
Ap. koreana KUC21332T Egg of Arctoscopus japonicus Republic of Korea – MH498444 MH498524 MH498482 MH544664
Ap. koreana KUNCC23-15553 Bamboo sp. China Saprobe PP584787 PP584690 PP982289 PP933195
Ap. lageniformis KUC21686T Branch of Phyllostachys pubescens Republic of Korea – ON787761 ON764022 ON806636 ON806626
Ap. locuta-pollinis LC 11683T Brassica campestris China Saprobe NA MF939595 MF939622 MF939616
Ap. longistroma MFLUCC 11-0481T Dead culms of bamboo Thailand Saprobe KU863129 KU940141 NA NA
Ap. lophatheri CFCC 58975T On diseased leaves of Lophatherum gracile China – OR133588 OR125566 OR139980 OR139970
Ap. machili SAUCC 1175A–4T Machilus nanmu China – OR739574 OR739433 OR757130 OR753450
Ap. magnispora ZHKUCC 22-0001T Bamboo China Saprobe OM486971 OM728647 OM543544 OM543543
Ap. malaysiana CBS 102053T Macaranga hullettii Malaysia Saprobe KF144942 KF144896 KF144988 KF145030
Ap. marianiae AP18219T Phleum pratense Spain Saprobe ON692422 ON692406 ON677186 NA
Ap. marii CBS 497.90T Beach sands Spain Saprobe KF144947 AB220252 KF144993 KF145035
Ap. marina KUC21328T Seaweed Republic of Korea – MH498458 MH498538 MH498496 MH544669
Ap. mediterranea IMI 326875 Air Spain Saprobe AB220337 AB220243 AB220290 NA
Ap. menglaensis KUNCC 24-17546T Dead culms of bamboo China Saprobe PP584790 PP584693 PP982292 PP933198
Ap. menglaensis KUNCC 24-17547 Dead culms of bamboo China Saprobe PP584791 PP584694 PP982293 PP933199
Ap. minutispora 17E-042T Mountain soil Republic of Korea – NA LC517882 LC518888 LC518889
Ap. montagnei AP301120T Balearic Islands Spain Sprobes ON692424 ON692408 ON677188 ON677182
Ap. mori MFLU 18-2514T Morus australis China (Taiwan) Saprobe MW114393 MW114313 NA NA
Ap. mukdahanensis MFLUCC 21-0026T Dead bamboo Thailand Saprobe OP377742 OP377735 NA OP381089
Ap. multiloculata MFLUCC 21-0023T Dead bamboo Thailand Saprobe OL873138 OL873137 OL874718 NA
Ap. mytilomorpha DAOM 214595T Andropogon sp. India Saprobe NA KY494685 NA NA
Ap. ananasi MFLUCC 23-0101T Ananas comosus Thailand Saprobe OR438877 OR438410 OR538085 OR500339
Ap. neobambusae LC 7106T Leaves of bamboo China Saprobe/endophyte KY494794 KY494718 KY705186 KY806204
Ap. neochinense CFCC 53036T Fargesia qinlingensis China Saprobe NA MK819291 MK818547 MK818545
Ap. neogarethjonesii HKAS 102408T Bamboo China Saprobe MK070898 MK070897 NA NA
Ap. neogongcheniae YNE01248T Living stems of Poaceae plant China Endophyte PP033106 PP033263 PP034695 PP034687
Ap. neogongcheniae YNE01260 Living stems of Poaceae plant China Endophyte PP033107 PP033264 PP034696 PP034688
Ap. neosubglobosa JHB 006 Bamboo China Saprobe KY356094 KY356089 NA NA
Ap. neosubglobosa KUMCC 16-0203T Bamboo China Saprobe KY356095 KY356090 NA NA
Ap. obovata LC 4940T Lithocarpus sp. China Endophyte KY494772 KY494696 KY705166 KY705095
Ap. oenotherae CFCC 58972T On diseased
leaves of Oenothera bienni 		China – OR133590 OR125568 OR139982 OR139972
Ap. olivata ZY22.052T Soil China – OR680598 OR680531 OR843234 OR858925
Ap. olivata ZY22.053 Soil China – OR680599 OR680532 OR843235 OR858926
Ap. ovata CBS 115042T Arundinaria hindsii China Saprobe KF144950 KF144903 KF144995 KF145037
Ap. paragongcheniae YNE00992T Living stems of Poaceae plant China Endophyte PP033104 PP033261 PP034693 PP034685
Ap. paragongcheniae YNE01259 Living stems of Poaceae plant China Endophyte PP033105 PP033262 PP034694 PP034686
Ap. paraphaeosperma MFLUCC 13-0644T Dead culms of bamboo Thailand Saprobe KX822124 KX822128 NA NA
Ap. phragmitis CPC 18900 Phragmites australis Italy Saprobe KF144956 KF144909 KF145001 KF145043
Ap. phyllostachydis MFLUCC 18-1101T Phyllostachys heteroclada China Saprobe MH368077 MK351842 MK291949 MK340918
Ap. piptatheri CBS 145149T Piptatherum miliaceum Spain Saprobe MK014860 MK014893 NA NA
Ap. pseudohyphopodii KUC21680T Culm of Phyllostachys pubescens Republic of Korea – ON787765 ON764026 ON806640 ON806630
Ap. pseudoparenchymatica LC7234T Leaves of bamboo China Endophyte KY494819 KY494743 KY705211 KY705139
Ap. pseudorasikravindrae KUMCC 20-0208T Bambusa dolichoclada China Saprobe NA MT946344 MT947367 MT947361
Ap. pseudosinensis CPC 21546T On diseased leaves of bamboo Netherlands Saprobe KF144957 KF144910 NA KF145044
Ap. pseudospegazzinii CBS 102052T Macaranga hullettii Malaysia Saprobe KF144958 KF144911 KF145002 KF145045
Ap. pterosperma CPC 20193T Lepidosperma gladiatum Australia Saprobe KF144960 KF144913 KF145004 KF145046
Ap. pusillisperma KUC21321T Seaweed Republic of Korea – MH498453 MH498533 MH498491 MN868930
Ap. qinlingensis CFCC 52303T Fargesia qinlingensis China Saprobe NA MH197120 MH236791 MH236795
Ap. rasikravindrae LC 8179 Brassica rapa China Saprobe KY494835 KY494759 KY705227 KY705155
Ap. rasikravindrae MFLUCC 21-0051 Dead culms of bamboo Thailand Saprobe MZ542527 MZ542523 MZ546412 MZ546408
Ap. rasikravindrae MFLUCC 21-0054 Dead culms of maize Thailand Saprobe MZ542526 MZ542522 MZ546411 MZ546407
Ap. sacchari CBS 372.67 Air Endophyte KF144964 KF144918 KF145007 KF145049
Ap. sacchari CBS 664.74 Soil under Calluna vulgaris Netherlands Endophyte KF144965 KF144919 KF145008 KF145050
Ap. saccharicola CBS 831.71 Air Netherlands Endophyte KF144969 KF144922 KF145012 KF145054
Ap. sargassi KUC21228T Sargassum fulvellum Republic of Korea – KT207696 KT207746 KT207644 MH544677
Ap. sasae CBS 146808T Dead culms China Saprobe MW883797 MW883402 MW890120 NA
Ap. septata CGMCC 3.20134T Bamboo China Saprobe MW478890 MW481711 MW522960 MW522943
Ap. senecionis KUNCC23-15556T Senecio scandens China Saprobe PP584794 PP584697 NA PP993513
Ap. senecionis KUNCC23-15557 Senecio scandens China Saprobe PP584795 PP584698 NA PP993514
Ap. serenensis IMI 326869T Excipients, atmosphere, and home dust Spain Saprobe AB220344 AB220250 AB220297 NA
Ap. setariae CFCC 54041 Setaria viridis China Saprobe NA MT492004 MT497466 MW118456
Ap. setostroma KUMCC 19-0217 Dead branches of bamboo China Saprobe MN528011 MN528012 NA MN527357
Ap. shangrilaensis GMBCC1019T Bamboo China Saprobe PQ111481 PQ111492 PQ164976 PQ164974
Ap. shangrilaensis GMBCC1020 Bamboo China Saprobe PQ111482 PQ111493 PQ164977 PQ164975
Ap. sichuanensis HKAS 107008T Dead culm of grass China Saprobe MW240578 MW240648 MW775605 NA
Ap. sorghi URM 93000T Sorghum bicolor Brazil Endophyte NA MK371706 MK348526 NA
Ap. sp. ZHKUCC 23-0010 Wurfbainia villosa China Endophyte OQ587988 OQ588000 OQ586079 OQ586066
Ap. sp. ZHKUCC 23-0011 Wurfbainia villosa China Endophyte OQ587989 OQ588001 OQ586080 NA
Ap. stipae CBS 146804T Dead culm of Stipa gigantea Spain Saprobe MW883798 MW883403 MW890121 MW890082
Ap. subglobosa MFLUCC 11-0397T Dead culms of bamboo Thailand Saprobe KR069113 KR069112 NA NA
Ap. subglobosa GMB-W1024 Bamboo China Saprobe PQ140165 PQ140162 PQ463973 PQ464024
Ap. subrosea LC 7292T Leaves of bamboo China Endophyte KY494828 KY494752 KY705220 KY705148
Ap. taeanensis KUC21322T Seaweed Republic of Korea – NA MH498515 MH498473 MH544662
Ap. thailandica MFLUCC 15-0202T Dead culms of bamboo Thailand Saprobe KU863133 KU940145 NA NA
Ap. trachycarpi KUNCC23-15558T Trachycarpus fortune China Saprobe PP584798 PP584701 PP982298 PP933204
Ap. trachycarpi KUNCC23-15559 Trachycarpus fortune China Saprobe PP584799 PP584702 PP982299 PP933205
Ap. tropica MFLUCC 21-0056T Dead culms of bamboo Thailand Saprobe OK491653 OK491657 NA NA
Ap. vietnamensis IMI 99670T Citrus sinensis Vietnam Saprobe KX986111 KX986096 KY019466
Ap. wurfbainiae ZHKUCC 23-0008T Wurfbainia villosa China Endophyte OQ587986 OQ587998 OQ586077 OQ586064
Ap. xenocordella CBS 478.86T Soil from roadway Zimbabwe – KF144970 KF144925 KF145013 KF145055
Ap. xenocordella CBS 595.66 On dead branches Misiones Saprobe KF144971 KF144926 NA NA
Ap. xishuangbannaensis KUMCC 21-0695T The wing of Rhinolophus pusillus China – OP363248 ON426832 OR025930 OR025969
Ap. yunnana MFLUCC 15-1002T Phyllostachys nigra China Saprobe KU863135 KU940147 NA NA
Ap. yunnanensis ZHKUCC 23-0014T Grass China Saprobe OQ587992 OQ588004 OQ586083 OQ586070
Ap. zhaotongensis GMBCC1015T Bamboo China Saprobe PQ111489 PQ111500 PQ463980 PQ464016
Ap. zhaotongensis GMBCC1016 Bamboo China Saprobe PQ111490 PQ111501 PQ463981 PQ464017
Ap. zhenxiongensis GMBCC1017T Bamboo China Saprobe PQ111487 PQ111498 PQ463978 PQ464018
Ap. zhenxiongensis GMBCC1018 Bamboo China Saprobe PQ111488 PQ111499 PQ463979 PQ464019
Neoarthrinium urticae IMI 326344 Leaf litter India – AB220339 AB220245 AB220292 NA

Newly generated sequences in this study are in bold. “T” indicates type materials; “NA” indicates information not available.

AMH, Ajrekar Mycological Herbarium, Pune, Maharashtra, India; CBS, Culture collection of the Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands; CFCC, China Forestry Culture Collection Center, Beijing, China; CGMCC, China General Micro biological Culture Collection; CPC, Culture collection of Pedro Crous, housed at the Westerdijk Fungal Biodiversity Institute; DAOM, Canadian Collection of Fungal Cultures, Ottawa, Canada; GMBCC, Guizhou Medical University Culture Collection, Guiyang, China; GMB-W, Herbarium of Guizhou Medical University, Guiyang, China; GUCC, Guizhou University Culture Collection, Guizhou, China; GZCC, Guizhou Culture Collection, China; HKAS, Herbarium of Cryptogams, Kunming Institute of Botany, Chinese Academy of Sciences, Yunnan, China; ICMP, International Collection of Microorganisms from Plants, New Zealand; IMI, Culture collection of CABI Europe UK Centre, Egham, UK; JHB, H.B. Jiang; KUC, the Korea University Fungus Collection, Seoul, Korea; SFC the Seoul National University Fungus Collection; KUMCC, Culture collection of Kunming Institute of Botany, Yunnan, China; KUNCC; Kunming Institute of Botany Culture Collection Center, Kunming, China; LC, Personal culture collection of Lei Cai, housed in the Institute of Microbiology, Chinese Academy of Sciences, China; MFLUCC, Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; SAUCC, Shandong Agricultural University Culture Collection; URM, ZHKUCC, Zhongkai University of Agriculture and Engineering, Guangdong, China.