Table 1.
Summary of T. pallidum SS14 proteins detected.
| Number of detected T. pallidum SS14 proteins | ||
|---|---|---|
| Number of proteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 607 (61.5% proteome coverage) | 9 (0.91% proteome coverage) | 598 (60.6% proteome coverage) |
| Proteome coverage of T. pallidum SS14: this study and previous study (Romeis et al., 2021) | ||
| Number of proteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 663 (67.2% proteome coverage) (259 SS14 proteins identified only in the present study) | 7 (0.71% proteome coverage) | 656 (66.6% proteome coverage) (252 SS14 proteins identified only in the present study) |
| Detection of T. pallidum miniproteins of unknown function | ||
| Number of miniproteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 14 (17.9% miniprotein coverage) (14 SS14 miniproteins uniquely detected in the present study) | 1 (1.3% miniprotein coverage) | 13 (16.7% miniprotein coverage) (13 SS14 miniproteins uniquely detected in the present study) |
| Detection of hypothetical proteins and proteins of unknown function | ||
| Number of proteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 146/282 total proteins detected (51.8% coverage) (76 SS14 proteins of unknown function uniquely detected in the present study) | 1 (0.4% coverage) | 145 (51.4% coverage) (75 SS14 proteins of unknown function uniquely detected in the present study) |
| Detection of known or predicted OMPs | ||
| Number of proteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 22 (64.7% known/predicted OMP coverage) (11 SS14 OMPs uniquely detected in the present study) | 0 (0% known/predicted OMP coverage) | 22 (64.7% known/predicted OMP coverage) (11 SS14 OMPs uniquely detected in the present study) |
| Detection of putative pathogenesis-related proteins (PPRPs) | ||
| Number of proteins detected | 1 peptide for protein ID | 2 or more peptides for protein ID |
| 23 (67.6% coverage) (8 PPRPs identified only in the present study) | 0 (0% coverage) | 23 (67.6% coverage) (8 PPRPs identified only in the present study) |