Table 2.

Hormone-related gene ontology terms for DEGs upon SlDLK2 overexpression.

	SlDLK2 OE repressed genes		SlDLK2 OE induced genes
	Fold enrichment	FDR	Fold enrichment	FDR
Response to cytokinin	6.02	****
Response to auxin	5.89	****
Regulation of jasmonic acid mediated signaling pathway	5.89	***
Isoprenoid catabolic process	4.34	***
Response to hormone	2.58	****	3.59	***
Abscisic acid-activated signaling pathway (ABA receptors)			9.04	**
Cellular response to abscisic acid stimulus			9.04	**
Abscisic acid binding			9.80	**
Isoprenoid binding			9.04	**
Hormone binding			8.71	**

GO enriched terms related to hormones for SlDLK2 OE up- and downregulated gene sets (fold change >2 or < −2, respectively, and p < 0.05) in tomato roots. Fold enrichment values and FDR are indicated (**, FDR < 0.01; ***, FDR < 0.001; ****, FDR < 0.0001). Analysis was performed using PhanterDB.