Table 5.
Alternative acceptor and donor splice sites, alternative 5'exons, and exon skipping examples based on cDNA alignments
| Locus | Gene name | cDNA accessions |
| Alternative acceptor splice sites | ||
| At3g58710 | WRKY DNA-binding protein | Ceres:100465, gi:15991735 |
| At5g35680 | Expressed protein | Ceres:11304, gi:14596002 |
| At2g38860 | Expressed protein | Ceres:114031, gi:13122287 |
| At4g31550 | DNA-binding protein | Ceres:11953, gi:15384214 |
| At1g22700 | Expressed protein | Ceres:120133, gi:15294175 |
| At4g30480 | Expressed protein | Ceres:12573, gi:14423435 |
| At1g52870 | Expressed protein | Ceres:126586, gi:14326544 |
| At5g41810 | Expressed protein | Ceres:126660, gi:14532565 |
| At1g63970 | Expressed protein | Ceres:15758, gi:11386014 |
| At2g33830 | Auxin-regulated protein | Ceres:1711, gi:11127600 |
| At5g20040 | IPP transferase | Ceres:19250, gi:14279069 |
| At3g55330 | Oxygen-evloving complex subunit | Ceres:21674, Ceres:3747 |
| At1g60850 | RNA polymerase subunit | Ceres:21961, gi:514321 |
| At1g76405 | Expressed protein | Ceres:23773, gi:13358245 |
| At1g22630 | Expressed protein | Ceres:37537, gi:15010607 |
| At1g02500 | S-adenosylmethionine synthase | Ceres:37800, gi:15450420 |
| At4g20380 | Zinc finger protein Lsd1 | Ceres:38456, gi:1872520 |
| At3g54380 | Expressed protein | Ceres:38778, gi:14423485 |
| At3g04830 | Expressed protein | Ceres:38917, gi:15293268 |
| At1g11840 | Lactoylglutathione lyase | Ceres:39107, gi:11094298 |
| At1g02090 | COP9 complex subunit | Ceres:40042, gi:3288822 |
| At1g79650 | DNA repair protein RAD23 | Ceres:40579, gi:14334441 |
| At2g25625 | Expressed protein | Ceres:465, gi:14334615 |
| At4g02640 | Expressed protein | Ceres:6568, gi:10954094 |
| At3g11930 | Ethylene-responsive protein | Ceres:7474, gi:13926249 |
| At2g20820 | Expressed protein | Ceres:91872, gi:14190456 |
| At3g09150 | Expressed protein | Ceres:98026, gi:13359272 |
| Alternative donor splice sites | ||
| At1g16460 | Mercaptopyruvate sulfurtransferase | Ceres:111646, gi:6009982 |
| At5g16540 | Zinc finger protein 3 | Ceres:113763, gi:4689375 |
| At2g41070 | bZIP family transcription factor | Ceres:114632, gi:13346156 |
| At2g36000 | Expressed protein | Ceres:123727, gi:14532493 |
| At3g21175 | Expressed protein | Ceres:12996, gi:14596058 |
| At5g61880 | Expressed protein | Ceres:146274, gi:14517497 |
| At3g14230 | RAP2 family protein | Ceres:158240, gi:15450917 |
| At3g03890 | Expressed protein | Ceres:18355, gi:14190432 |
| At1g67700 | Expressed protein | Ceres:19973, gi:15215605 |
| At3g55630 | Tetrahydrofolylpolyglutamate synthase | Ceres:230791, gi:15292866 |
| At2g21620 | Expressed protein | Ceres:31655, gi:15320407 |
| At4g10100 | Expressed protein | Ceres:35962, gi:6635742 |
| At1g23950 | Expressed protein | Ceres:41387, gi:15146261 |
| At1g24260 | Floral homeotic protein | Ceres:5055, gi:2345157 |
| At2g39730 | Expressed protein | Ceres:7114, gi:15450670 |
| At3g07760 | Expressed protein | Ceres:7246, gi:15451021 |
| At3g06720 | Importin alpha | Ceres:9351, gi:4191743 |
| Alternative 5' exons | ||
| At3g57810 | Expressed protein | Ceres:101256, Ceres:29384 |
| At3g03780 | Methionine synthase | Ceres:111720, gi:14532771 |
| At5g59890 | Actin depolymerizing factor 4 | Ceres:11691, gi:15215858 |
| At3g49010 | 60S ribosomal protein L13 | Ceres:12182, gi:15292840 |
| At5g52210 | GTP-binding protein | Ceres:16621, gi:1184980 |
| At1g01100 | Acidic ribosomal protein | Ceres:24367, gi:15293082 |
| At2g41430 | ERD15 | Ceres:31388, gi:13926319 |
| At3g08580 | Adenylate translocator | Ceres:36818, gi:1433 |
| At5g05000 | GTP-binding protein | Ceres:6734, gi:1151243 |
| At3g48880 | Expressed protein | Ceres:99337, gi:15028346 |
| Exon skipping | ||
| At5g54940 | Translation initiation factor | Ceres:103464, Ceres:32071 |
| At2g46800 | Zinc transporter | Ceres:207558, gi:4206639 |
| At5g53860 | Expressed protein | Ceres:22860, gi:15215799 |
| At5g27840 | TOPP8 Ser/Thr protein phosphatase type-1 | Ceres:38656, gi:14596132 |
| At3g23280 | Expressed protein | Ceres:41648, gi:15010671 |
| At1g77080 | Expressed protein | Ceres:92459, gi:11545544, gi:11545546, gi:13649968 |
A full list with illustrations and supporting alignment data is available at [26].