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. 2024 Dec 10;9(51):50599–50621. doi: 10.1021/acsomega.4c08439

Table 2. Mean RMSD Values (in Angstroms) of all MD Simulations for Each Toxin for the Selected Regions, or the Whole Proteina.

toxins Atr-I Leuc-a
region/position RMSD (Å) RMSD (Å)
total 0.90 ± 0.14 0.90 ± 0.13
100–108 0.64 ± 0.23 0.55 ± 0.16
148–179 (Ω-loop) 0.89 ± 0.20 0.76 ± 0.17
156–164 0.87 ± 0.28 0.60 ± 0.16
154–162 1.01 ± 0.30 0.69 ± 0.20
zinc environment 0.35 ± 0.12 0.37 ± 0.11
a

The zinc environment is defined by the amino acid residues His142, Glu143, His146, His152, the zinc ion, and the inhibitor molecule.