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. 2024 Dec 30;15:10854. doi: 10.1038/s41467-024-55195-w

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 7 — a Alluvial plot showing the differentially expressed genes (DEGs) in four tissues of TIL11, and whether their homologs in modern maize maintain this differential expression. These plots show high level of transcription profile conservation in pollen, moderate levels in coleoptilar nodes (CN) and root tips, and low levels in immature ears, in addition to more genes not having a homolog (“Methods”). b Percentage of enhancers containing conserved regions in the pan-andropoganeae clade identified by PhastCons (“Methods”). c Percentage of enhancers containing conserved regions identified by Conservatory CNS (“Methods”). In both conservation analyses, misannotated genes show high levels of conservation as do the enhancers, especially the ones with bi-directional enhancer RNAs, in all tissues but in immature ears.