Table 1.

Percentage of individuals for each marker that do not follow the assumption that genotype is homozygous in females and heterozygous in males (error rate) by dataset

Marker	Sim 5a,b	Sim 50	Sim rand	Sim real	Real data
AX-89953234	5	50	23	9	51
AX-89955231	5	50	16	6	27
AX-89970231	5	50	36	5	44
AX-89928458	5	50	17	7	47
AX-89941119	5	50	9	8	5
AX-89958463	5	50	26	28	30
AX-89968299	5	50	27	24	9
AX-89924652	5	50	21	54	18
AX-89960682	5	50	22	27	17
AX-89936452	5	50	33	39	48
AX-89947083	5	50	8	25	54
AX-89955288	5	50	13	38	38
AX-89950690	5	50	44	32	53
AX-89926028	5	50	29	37	28
AX-89963605	5	50	14	55	47

^aError rate computed as SNP_Error/(SNP_Total − SNP_Missing) * 100, where SNP_Error is the number of erroneous SNP samples, SNP_Total is the total number of SNP samples, and SNP_Missing is the number of missing SNP samples. The average proportions of SNP_Missing were 5% and 6% in the simulated and real data, respectively

^bSim 5 = simulated data with a 5% missing rate for all SNPs; Sim 50 = simulated data with a 50% missing rate for all SNPs; Sim rand = simulated data with a random error rate in the range of 5 to 50%; Sim real = simulated data with a random error rate in the range of 5 to 10% for 5 SNPs and 10 to 50% for 10 SNPs; real data = data from the Finnish Rainbow Trout Breeding Program