Table 3.
Key candidate genes associated with photosynthesis and leaf morphology traits identified by GWAS.
| QTL cluster | SNP | Trait | Gene id-dormor | Gene id-ZS11 | Annotation |
|---|---|---|---|---|---|
| q.A3-8 | A03_19067727 | PA, PL | BnaA03g38230D | BnaA03G0389800ZS | calmodulin-binding receptor-like cytoplasmic kinase 3 (CRCK3) |
| q.A5-4 | A05_18835949 | PA | BnaA05g25510D | BnaA05G0412300ZS | eukaryotic translation initiation factor 4A2 (EIF4A2) |
| q.A7-2 | A07_16847439 | Ci | BnaA07g21550D | BnaA07G0245100ZS | NADP-malic enzyme 4 (NADP-ME4) |
| q.A9-2 | A09_8460857 | Chl | BnaA09g15700D | BnaA09G0187300ZS | proteasome alpha subunit F1 (PAF1) |
| q.A9-3 | A09_29345053 | LW, LA | BnaA09g42000D | BnaA09G0586700ZS | nicotinate phosphoribosyltransferase 2 (NAPRT2) |
| q.A9-4 | A09_31652307 | LW, LA, PL | BnaA09g45940D | BnaA09G0637400ZS | WRKY DNA-binding protein 4 (WRKY4) |
| q.C1-6 | C01_29895643 | Chl, PA, LW | BnaC01g32150D | BnaC01G0381800ZS | MAP kinase kinase 5 (MKK5) |
| q.C7-2 | C07_31419060 | Ci, Gs, Tr, LW | BnaC07g24400D | BnaC07G0275300ZS | cytochrome P450, family 709, subfamily B, polypeptide 3 (CYP709B3) |