Skip to main content
The EMBO Journal logoLink to The EMBO Journal
. 1997 Feb 3;16(3):465–472. doi: 10.1093/emboj/16.3.465

Identification of a GDI displacement factor that releases endosomal Rab GTPases from Rab-GDI.

A B Dirac-Svejstrup 1, T Sumizawa 1, S R Pfeffer 1
PMCID: PMC1169650  PMID: 9034329

Abstract

Prenylated Rab GTPases occur in the cytosol in their GDP-bound conformations bound to a cytosolic protein termed GDP-dissociation inhibitor (GDI). Rab-GDI complexes represent a pool of active, recycling Rab proteins that can deliver Rabs to specific and distinct membrane-bound compartments. Rab delivery to cellular membranes involves release of GDI, and the membrane-associated Rab protein then exchanges its bound GDP for GTP. We report here the identification of a novel, membrane-associated protein factor that can release prenylated Rab proteins from GDI. This GDI-displacement factor (GDF) is not a guanine nucleotide exchange factor because it did not influence the intrinsic rates of nucleotide exchange by Rabs 5, 7 or 9. Rather, GDF caused the release of each of these endosomal Rabs from GDI, permitting them to exchange nucleotide at their intrinsic rates. GDF displayed the greatest catalytic rate enhancement on Rab9-GDI complexes. However, catalytic rate enhancement paralleled the potency of GDI in blocking nucleotide exchange: GDI was shown to be most potent in blocking nucleotide exchange by Rab9. The failure of GDF to act on Rab1-GDI complexes suggests that it may be specific for endosomal Rab proteins. This novel, membrane-associated activity may be part of the machinery used to localize Rabs to their correct intracellular compartments.

Full Text

The Full Text of this article is available as a PDF (375.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bradford M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976 May 7;72:248–254. doi: 10.1006/abio.1976.9999. [DOI] [PubMed] [Google Scholar]
  2. Brennwald P., Novick P. Interactions of three domains distinguishing the Ras-related GTP-binding proteins Ypt1 and Sec4. Nature. 1993 Apr 8;362(6420):560–563. doi: 10.1038/362560a0. [DOI] [PubMed] [Google Scholar]
  3. Burnette W. N. "Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate--polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal Biochem. 1981 Apr;112(2):195–203. doi: 10.1016/0003-2697(81)90281-5. [DOI] [PubMed] [Google Scholar]
  4. Burton J., Roberts D., Montaldi M., Novick P., De Camilli P. A mammalian guanine-nucleotide-releasing protein enhances function of yeast secretory protein Sec4. Nature. 1993 Feb 4;361(6411):464–467. doi: 10.1038/361464a0. [DOI] [PubMed] [Google Scholar]
  5. Chavrier P., Gorvel J. P., Stelzer E., Simons K., Gruenberg J., Zerial M. Hypervariable C-terminal domain of rab proteins acts as a targeting signal. Nature. 1991 Oct 24;353(6346):769–772. doi: 10.1038/353769a0. [DOI] [PubMed] [Google Scholar]
  6. Dirac-Svejstrup A. B., Soldati T., Shapiro A. D., Pfeffer S. R. Rab-GDI presents functional Rab9 to the intracellular transport machinery and contributes selectivity to Rab9 membrane recruitment. J Biol Chem. 1994 Jun 3;269(22):15427–15430. [PubMed] [Google Scholar]
  7. Dunn B., Stearns T., Botstein D. Specificity domains distinguish the Ras-related GTPases Ypt1 and Sec4. Nature. 1993 Apr 8;362(6420):563–565. doi: 10.1038/362563a0. [DOI] [PubMed] [Google Scholar]
  8. Goda Y., Pfeffer S. R. Selective recycling of the mannose 6-phosphate/IGF-II receptor to the trans Golgi network in vitro. Cell. 1988 Oct 21;55(2):309–320. doi: 10.1016/0092-8674(88)90054-2. [DOI] [PubMed] [Google Scholar]
  9. Horiuchi H., Giner A., Hoflack B., Zerial M. A GDP/GTP exchange-stimulatory activity for the Rab5-RabGDI complex on clathrin-coated vesicles from bovine brain. J Biol Chem. 1995 May 12;270(19):11257–11262. doi: 10.1074/jbc.270.19.11257. [DOI] [PubMed] [Google Scholar]
  10. Laemmli U. K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug 15;227(5259):680–685. doi: 10.1038/227680a0. [DOI] [PubMed] [Google Scholar]
  11. Lanzetta P. A., Alvarez L. J., Reinach P. S., Candia O. A. An improved assay for nanomole amounts of inorganic phosphate. Anal Biochem. 1979 Nov 15;100(1):95–97. doi: 10.1016/0003-2697(79)90115-5. [DOI] [PubMed] [Google Scholar]
  12. Moya M., Roberts D., Novick P. DSS4-1 is a dominant suppressor of sec4-8 that encodes a nucleotide exchange protein that aids Sec4p function. Nature. 1993 Feb 4;361(6411):460–463. doi: 10.1038/361460a0. [DOI] [PubMed] [Google Scholar]
  13. Novick P., Brennwald P. Friends and family: the role of the Rab GTPases in vesicular traffic. Cell. 1993 Nov 19;75(4):597–601. doi: 10.1016/0092-8674(93)90478-9. [DOI] [PubMed] [Google Scholar]
  14. Nuoffer C., Balch W. E. GTPases: multifunctional molecular switches regulating vesicular traffic. Annu Rev Biochem. 1994;63:949–990. doi: 10.1146/annurev.bi.63.070194.004505. [DOI] [PubMed] [Google Scholar]
  15. Pfeffer S. R., Dirac-Svejstrup A. B., Soldati T. Rab GDP dissociation inhibitor: putting rab GTPases in the right place. J Biol Chem. 1995 Jul 21;270(29):17057–17059. doi: 10.1074/jbc.270.29.17057. [DOI] [PubMed] [Google Scholar]
  16. Pfeffer S. R. Rab GTPases: master regulators of membrane trafficking. Curr Opin Cell Biol. 1994 Aug;6(4):522–526. doi: 10.1016/0955-0674(94)90071-x. [DOI] [PubMed] [Google Scholar]
  17. Sasaki T., Kikuchi A., Araki S., Hata Y., Isomura M., Kuroda S., Takai Y. Purification and characterization from bovine brain cytosol of a protein that inhibits the dissociation of GDP from and the subsequent binding of GTP to smg p25A, a ras p21-like GTP-binding protein. J Biol Chem. 1990 Feb 5;265(4):2333–2337. [PubMed] [Google Scholar]
  18. Schalk I., Zeng K., Wu S. K., Stura E. A., Matteson J., Huang M., Tandon A., Wilson I. A., Balch W. E. Structure and mutational analysis of Rab GDP-dissociation inhibitor. Nature. 1996 May 2;381(6577):42–48. doi: 10.1038/381042a0. [DOI] [PubMed] [Google Scholar]
  19. Shapiro A. D., Pfeffer S. R. Quantitative analysis of the interactions between prenyl Rab9, GDP dissociation inhibitor-alpha, and guanine nucleotides. J Biol Chem. 1995 May 12;270(19):11085–11090. doi: 10.1074/jbc.270.19.11085. [DOI] [PubMed] [Google Scholar]
  20. Shapiro A. D., Riederer M. A., Pfeffer S. R. Biochemical analysis of rab9, a ras-like GTPase involved in protein transport from late endosomes to the trans Golgi network. J Biol Chem. 1993 Apr 5;268(10):6925–6931. [PubMed] [Google Scholar]
  21. Simon I., Zerial M., Goody R. S. Kinetics of interaction of Rab5 and Rab7 with nucleotides and magnesium ions. J Biol Chem. 1996 Aug 23;271(34):20470–20478. doi: 10.1074/jbc.271.34.20470. [DOI] [PubMed] [Google Scholar]
  22. Soldati T., Rancaño C., Geissler H., Pfeffer S. R. Rab7 and Rab9 are recruited onto late endosomes by biochemically distinguishable processes. J Biol Chem. 1995 Oct 27;270(43):25541–25548. doi: 10.1074/jbc.270.43.25541. [DOI] [PubMed] [Google Scholar]
  23. Soldati T., Riederer M. A., Pfeffer S. R. Rab GDI: a solubilizing and recycling factor for rab9 protein. Mol Biol Cell. 1993 Apr;4(4):425–434. doi: 10.1091/mbc.4.4.425. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Soldati T., Shapiro A. D., Pfeffer S. R. Reconstitution of Rab9 endosomal targeting and nucleotide exchange using purified Rab9-GDP dissociation inhibitor complexes and endosome-enriched membranes. Methods Enzymol. 1995;257:253–259. doi: 10.1016/s0076-6879(95)57030-6. [DOI] [PubMed] [Google Scholar]
  25. Soldati T., Shapiro A. D., Svejstrup A. B., Pfeffer S. R. Membrane targeting of the small GTPase Rab9 is accompanied by nucleotide exchange. Nature. 1994 May 5;369(6475):76–78. doi: 10.1038/369076a0. [DOI] [PubMed] [Google Scholar]
  26. Stenmark H., Valencia A., Martinez O., Ullrich O., Goud B., Zerial M. Distinct structural elements of rab5 define its functional specificity. EMBO J. 1994 Feb 1;13(3):575–583. doi: 10.1002/j.1460-2075.1994.tb06295.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Tabas I., Kornfeld S. Purification and characterization of a rat liver Golgi alpha-mannosidase capable of processing asparagine-linked oligosaccharides. J Biol Chem. 1979 Nov 25;254(22):11655–11663. [PubMed] [Google Scholar]
  28. Ullrich O., Horiuchi H., Bucci C., Zerial M. Membrane association of Rab5 mediated by GDP-dissociation inhibitor and accompanied by GDP/GTP exchange. Nature. 1994 Mar 10;368(6467):157–160. doi: 10.1038/368157a0. [DOI] [PubMed] [Google Scholar]
  29. Zerial M., Stenmark H. Rab GTPases in vesicular transport. Curr Opin Cell Biol. 1993 Aug;5(4):613–620. doi: 10.1016/0955-0674(93)90130-i. [DOI] [PubMed] [Google Scholar]

Articles from The EMBO Journal are provided here courtesy of Nature Publishing Group

RESOURCES