Table 2.

Population genetic parameters calculated for combined dataset (24,764 SNP).

Population	N	HEchr	HOchr	FST
				25	28	29	32	33	34	37	39	3	AKTK	ARR	CSP	MON	TB_UK	TB_US
25	64	0.319 ± 0.009	0.325 ± 0.009	–	0.001 ± 0.001	0.003 ± 0.001	0.003 ± 0.001	0.003 ± 0.001	0.003 ± 0.001	0.003 ± 0.001	0.030 ± 0.007	0.008 ± 0.002	0.044 ± 0.006	0.057 ± 0.006	0.029 ± 0.004	0.008 ± 0.003	0.099 ± 0.017	0.096 ± 0.017
28	86	0.318 ± 0.008	0.318 ± 0.010	0.001 ± 0.001	–	0.004 ± 0.001	0.005 ± 0.001	0.002 ± 0.001	0.002 ± 0.001	0.003 ± 0.001	0.030 ± 0.007	0.008 ± 0.002	0.045 ± 0.007	0.058 ± 0.007	0.029 ± 0.004	0.007 ± 0.002	0.101 ± 0.018	0.098 ± 0.017
29	46	0.318 ± 0.009	0.326 ± 0.009	0.003 ± 0.001	0.004 ± 0.001	–	0.004 ± 0.001	0.003 ± 0.001	0.006 ± 0.001	0.004 ± 0.001	0.030 ± 0.007	0.007 ± 0.001	0.044 ± 0.006	0.057 ± 0.007	0.029 ± 0.005	0.008 ± 0.003	0.095 ± 0.015	0.092 ± 0.016
32	47	0.320 ± 0.009	0.342 ± 0.011	0.003 ± 0.001	0.005 ± 0.001	0.004 ± 0.001	–	0.006 ± 0.001	0.004 ± 0.001	0.006 ± 0.001	0.034 ± 0.007	0.011 ± 0.001	0.047 ± 0.006	0.059 ± 0.006	0.032 ± 0.004	0.012 ± 0.002	0.098 ± 0.017	0.095 ± 0.018
33	152	0.321 ± 0.009	0.317 ± 0.010	0.003 ± 0.001	0.002 ± 0.001	0.003 ± 0.001	0.006 ± 0.001	–	0.002 ± 0.001	0.002 ± 0.000	0.028 ± 0.007	0.006 ± 0.001	0.042 ± 0.006	0.055 ± 0.006	0.026 ± 0.004	0.006 ± 0.002	0.097 ± 0.016	0.094 ± 0.016
34	76	0.314 ± 0.009	0.317 ± 0.009	0.003 ± 0.001	0.002 ± 0.001	0.006 ± 0.001	0.004 ± 0.001	0.002 ± 0.001	–	0.004 ± 0.001	0.030 ± 0.006	0.010 ± 0.002	0.048 ± 0.006	0.061 ± 0.007	0.031 ± 0.005	0.007 ± 0.002	0.106 ± 0.018	0.104 ± 0.017
37	384	0.321 ± 0.008	0.319 ± 0.009	0.003 ± 0.001	0.003 ± 0.001	0.004 ± 0.001	0.006 ± 0.001	0.002 ± 0.000	0.004 ± 0.001	–	0.027 ± 0.007	0.008 ± 0.002	0.043 ± 0.006	0.057 ± 0.007	0.027 ± 0.004	0.005 ± 0.002	0.101 ± 0.017	0.099 ± 0.017
39	42	0.298 ± 0.010	0.308 ± 0.012	0.030 ± 0.007	0.030 ± 0.007	0.030 ± 0.007	0.034 ± 0.007	0.028 ± 0.007	0.030 ± 0.006	0.027 ± 0.007	–	0.032 ± 0.006	0.069 ± 0.009	0.079 ± 0.011	0.054 ± 0.007	0.034 ± 0.007	0.122 ± 0.017	0.120 ± 0.018
3	141	0.334 ± 0.008	0.324 ± 0.008	0.008 ± 0.002	0.008 ± 0.002	0.007 ± 0.001	0.011 ± 0.001	0.006 ± 0.001	0.010 ± 0.002	0.008 ± 0.002	0.032 ± 0.006	–	0.037 ± 0.006	0.050 ± 0.006	0.028 ± 0.004	0.015 ± 0.003	0.064 ± 0.012	0.060 ± 0.011
AKTK	19	0.300 ± 0.009	0.299 ± 0.012	0.044 ± 0.006	0.045 ± 0.007	0.044 ± 0.006	0.047 ± 0.006	0.042 ± 0.006	0.048 ± 0.006	0.043 ± 0.006	0.069 ± 0.009	0.037 ± 0.006	–	0.067 ± 0.009	0.058 ± 0.008	0.056 ± 0.009	0.097 ± 0.016	0.094 ± 0.017
ARR	24	0.299 ± 0.011	0.294 ± 0.016	0.057 ± 0.006	0.058 ± 0.007	0.057 ± 0.007	0.059 ± 0.006	0.055 ± 0.006	0.061 ± 0.007	0.057 ± 0.007	0.079 ± 0.011	0.050 ± 0.006	0.067 ± 0.009	–	0.059 ± 0.008	0.074 ± 0.01	0.109 ± 0.017	0.107 ± 0.018
CSP	18	0.297 ± 0.009	0.309 ± 0.013	0.029 ± 0.004	0.029 ± 0.004	0.029 ± 0.005	0.032 ± 0.004	0.026 ± 0.004	0.031 ± 0.005	0.027 ± 0.004	0.054 ± 0.007	0.028 ± 0.004	0.058 ± 0.008	0.059 ± 0.008	–	0.036 ± 0.004	0.110 ± 0.015	0.107 ± 0.015
MON	19	0.298 ± 0.009	0.306 ± 0.011	0.008 ± 0.003	0.007 ± 0.002	0.008 ± 0.003	0.012 ± 0.002	0.006 ± 0.002	0.007 ± 0.002	0.005 ± 0.002	0.034 ± 0.007	0.015 ± 0.003	0.056 ± 0.009	0.074 ± 0.01	0.036 ± 0.004	–	0.116 ± 0.020	0.113 ± 0.020
TB_UK	19	0.306 ± 0.010	0.321 ± 0.014	0.099 ± 0.017	0.101 ± 0.018	0.095 ± 0.015	0.098 ± 0.017	0.097 ± 0.016	0.106 ± 0.018	0.101 ± 0.017	0.122 ± 0.017	0.064 ± 0.012	0.097 ± 0.016	0.109 ± 0.017	0.110 ± 0.015	0.116 ± 0.02	–	0.003 ± 0.008
TB_US	17	0.310 ± 0.012	0.323 ± 0.016	0.096 ± 0.017	0.098 ± 0.017	0.092 ± 0.016	0.095 ± 0.018	0.094 ± 0.016	0.104 ± 0.017	0.099 ± 0.017	0.12 ± 0.018	0.060 ± 0.011	0.094 ± 0.017	0.107 ± 0.018	0.107 ± 0.015	0.113 ± 0.02	0.003 ± 0.008	–

N – number of individual samples.

H_Echr – expected heterozygosity per chromosome, mean ± standard deviation.

H_Ochr – observed heterozygosity per chromosome, mean ± standard deviation.

F_ST – Wright's fixation index between populations.