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. 2025 Jan 4;12:14. doi: 10.1038/s41597-024-04347-0

Table 5.

Annotation of repeat elements in S. sclarea.

Number of elements Length occupied Percentage of sequence
Retroelements 63707 167835296 bp 33.63%
SINEs: 0 0 bp 0.00%
Penelope: 0 0 bp 0.00%
LINEs: 3266 3106031 bp 0.62%
CRE/SLACS 0 0 bp 0.00%
L2/CR1/Rex 0 0 bp 0.00%
R1/LOA/Jockey 0 0 bp 0.00%
R2/R4/NeSL 0 0 bp 0.00%
RTE/Bov-B 0 0 bp 0.00%
L1/CIN4 3266 3106031 bp 0.62%
LTR elements: 60441 164729265 bp 33.01%
BEL/Pao 0 0 bp 0.00%
Ty1/Copia 32442 108414020 bp 21.72%
Gypsy/DIRS1 26971 53911254 bp 10.80%
Retroviral 0 0 bp 0.00%
DNA transposons 15170 8480073 bp 1.70%
hobo-Activator 2655 844031 bp 0.17%
Tc1-IS630-Pogo 1490 709657 bp 0.14%
En-Spm 0 0 bp 0.00%
MULE-MuDR 4813 3245267 bp 0.65%
PiggyBac 0 0 bp 0.00%
Tourist/Harbinger 4019 2031296 bp 0.41%
Other (Mirage, 0 0 bp 0.00%
P-element, Transib)
Rolling-circles 4743 2373257 bp 0.48%
Unclassified: 425389 158507734 bp 31.76%
Total interspersed repeats: 334823103 bp 67.09%
Small RNA: 0 0 bp 0.00%
Satellites: 0 0 bp 0.00%
Simple repeats: 111375 5117419 bp 1.03%
Low complexity: 13741 676966 bp 0.14%
Total 342990745 bp 68.73%