Table 1.

Summary of the sequence data and alignment statistics result for each sample.

Samples	Raw reads	Clean reads	Clean bases	Total mapped	Uniquely mapped	Mapping rate
Control_1	46346660	43826976	6.57G	34454485	34184128	78.00%
Control_2	49862810	47241832	7.09G	34860834	34607484	73.26%
Control_3	47402594	44932664	6.74G	35572563	35333391	78.64%
Drought_1	54773672	52262722	7.84G	42400131	42064309	80.49%
Drought_2	43007412	41318284	6.20G	32892954	32675508	79.08%
Drought_3	45428296	43763410	6.56G	35212964	34986700	79.95%
Salinity_1	49294556	46763496	7.01G	37206278	37004959	79.13%
Salinity_2	53431790	50876600	7.63G	41410756	41085872	80.76%
Salinity_3	54283762	51631836	7.74G	40807468	40451408	78.35%
Waterlogging_1	47946264	46113210	6.92G	36754635	36527243	79.21%
Waterlogging_2	48435170	46636170	7.00G	36997110	36770124	78.84%
Waterlogging_3	37450098	36012808	5.40G	28475516	28273001	78.51%
Heat_1	51508760	49749990	7.46G	40711543	40410634	81.23%
Heat_2	53744834	51906452	7.79G	43039645	42776187	82.41%
Heat_3	50084774	48388806	7.26G	40057423	39832383	82.32%
Cold_1	50524182	48791952	7.32G	39408890	39127109	80.19%
Cold_2	46794014	45115870	6.77G	36500149	36305800	80.47%
Cold_3	49575890	47808808	7.17G	38957044	38686761	80.92%