Abstract
The C34 subunit of yeast RNA polymerase (pol) III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and is therefore thought to participate in pol III recruitment. To study the role of C34 in transcription, we have mutagenized RPC34, the gene encoding C34, and found that mutations affecting growth also altered C34 interaction with TFIIIB70. The two mutant pol III that were purified had catalytic properties indistinguishable from those of the wild-type pol III on a poly[d(A-T)] template, while specific transcription of pol III genes in the presence of general transcription factors was impaired. The defect of the C34-1124 mutant enzyme could be compensated by increasing the amount of pol III present in the reaction, suggesting that the enzyme had a lower affinity for pre-initiation complexes. In contrast, the C34-1109 mutant enzyme was defective in transcription initiation due to impaired open complex formation. These observations demonstrate that the C34 subunit is a major determinant in pol III recruitment by the pre-initiation complex and further acts at a subsequent stage that involves the configuration of an initiation-competent form of RNA polymerase.
Full Text
The Full Text of this article is available as a PDF (599.0 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Boeke J. D., Trueheart J., Natsoulis G., Fink G. R. 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 1987;154:164–175. doi: 10.1016/0076-6879(87)54076-9. [DOI] [PubMed] [Google Scholar]
- Bushnell D. A., Bamdad C., Kornberg R. D. A minimal set of RNA polymerase II transcription protein interactions. J Biol Chem. 1996 Aug 16;271(33):20170–20174. doi: 10.1074/jbc.271.33.20170. [DOI] [PubMed] [Google Scholar]
- Camier S., Dechampesme A. M., Sentenac A. The only essential function of TFIIIA in yeast is the transcription of 5S rRNA genes. Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9338–9342. doi: 10.1073/pnas.92.20.9338. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chiannilkulchai N., Stalder R., Riva M., Carles C., Werner M., Sentenac A. RPC82 encodes the highly conserved, third-largest subunit of RNA polymerase C (III) from Saccharomyces cerevisiae. Mol Cell Biol. 1992 Oct;12(10):4433–4440. doi: 10.1128/mcb.12.10.4433. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Comai L., Zomerdijk J. C., Beckmann H., Zhou S., Admon A., Tjian R. Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits. Science. 1994 Dec 23;266(5193):1966–1972. doi: 10.1126/science.7801123. [DOI] [PubMed] [Google Scholar]
- Dieci G., Hermann-Le Denmat S., Lukhtanov E., Thuriaux P., Werner M., Sentenac A. A universally conserved region of the largest subunit participates in the active site of RNA polymerase III. EMBO J. 1995 Aug 1;14(15):3766–3776. doi: 10.1002/j.1460-2075.1995.tb00046.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dieci G., Sentenac A. Facilitated recycling pathway for RNA polymerase III. Cell. 1996 Jan 26;84(2):245–252. doi: 10.1016/s0092-8674(00)80979-4. [DOI] [PubMed] [Google Scholar]
- Flores O., Lu H., Killeen M., Greenblatt J., Burton Z. F., Reinberg D. The small subunit of transcription factor IIF recruits RNA polymerase II into the preinitiation complex. Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):9999–10003. doi: 10.1073/pnas.88.22.9999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gudenus R., Mariotte S., Moenne A., Ruet A., Memet S., Buhler J. M., Sentenac A., Thuriaux P. Conditional mutants of RPC160, the gene encoding the largest subunit of RNA polymerase C in Saccharomyces cerevisiae. Genetics. 1988 Jul;119(3):517–526. doi: 10.1093/genetics/119.3.517. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Harper J. W., Adami G. R., Wei N., Keyomarsi K., Elledge S. J. The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases. Cell. 1993 Nov 19;75(4):805–816. doi: 10.1016/0092-8674(93)90499-g. [DOI] [PubMed] [Google Scholar]
- Hausner W., Thomm M. The translation product of the presumptive Thermococcus celer TATA-binding protein sequence is a transcription factor related in structure and function to Methanococcus transcription factor B. J Biol Chem. 1995 Jul 28;270(30):17649–17651. doi: 10.1074/jbc.270.30.17649. [DOI] [PubMed] [Google Scholar]
- Hermann-Le Denmat S., Werner M., Sentenac A., Thuriaux P. Suppression of yeast RNA polymerase III mutations by FHL1, a gene coding for a fork head protein involved in rRNA processing. Mol Cell Biol. 1994 May;14(5):2905–2913. doi: 10.1128/mcb.14.5.2905. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huet J., Riva M., Sentenac A., Fromageot P. Yeast RNA polymerase C and its subunits. Specific antibodies as structural and functional probes. J Biol Chem. 1985 Dec 5;260(28):15304–15310. [PubMed] [Google Scholar]
- Huet J., Sentenac A. The TATA-binding protein participates in TFIIIB assembly on tRNA genes. Nucleic Acids Res. 1992 Dec 25;20(24):6451–6454. doi: 10.1093/nar/20.24.6451. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kassavetis G. A., Blanco J. A., Johnson T. E., Geiduschek E. P. Formation of open and elongating transcription complexes by RNA polymerase III. J Mol Biol. 1992 Jul 5;226(1):47–58. doi: 10.1016/0022-2836(92)90123-2. [DOI] [PubMed] [Google Scholar]
- Kassavetis G. A., Joazeiro C. A., Pisano M., Geiduschek E. P., Colbert T., Hahn S., Blanco J. A. The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB. Cell. 1992 Dec 11;71(6):1055–1064. doi: 10.1016/0092-8674(92)90399-w. [DOI] [PubMed] [Google Scholar]
- Kassavetis G. A., Nguyen S. T., Kobayashi R., Kumar A., Geiduschek E. P., Pisano M. Cloning, expression, and function of TFC5, the gene encoding the B" component of the Saccharomyces cerevisiae RNA polymerase III transcription factor TFIIIB. Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9786–9790. doi: 10.1073/pnas.92.21.9786. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lalo D., Steffan J. S., Dodd J. A., Nomura M. RRN11 encodes the third subunit of the complex containing Rrn6p and Rrn7p that is essential for the initiation of rDNA transcription by yeast RNA polymerase I. J Biol Chem. 1996 Aug 30;271(35):21062–21067. doi: 10.1074/jbc.271.35.21062. [DOI] [PubMed] [Google Scholar]
- López-De-León A., Librizzi M., Puglia K., Willis I. M. PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB. Cell. 1992 Oct 16;71(2):211–220. doi: 10.1016/0092-8674(92)90350-l. [DOI] [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
- Mosrin C., Riva M., Beltrame M., Cassar E., Sentenac A., Thuriaux P. The RPC31 gene of Saccharomyces cerevisiae encodes a subunit of RNA polymerase C (III) with an acidic tail. Mol Cell Biol. 1990 Sep;10(9):4737–4743. doi: 10.1128/mcb.10.9.4737. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Persinger J., Bartholomew B. Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling. J Biol Chem. 1996 Dec 20;271(51):33039–33046. doi: 10.1074/jbc.271.51.33039. [DOI] [PubMed] [Google Scholar]
- Qureshi S. A., Khoo B., Baumann P., Jackson S. P. Molecular cloning of the transcription factor TFIIB homolog from Sulfolobus shibatae. Proc Natl Acad Sci U S A. 1995 Jun 20;92(13):6077–6081. doi: 10.1073/pnas.92.13.6077. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roberts S., Miller S. J., Lane W. S., Lee S., Hahn S. Cloning and functional characterization of the gene encoding the TFIIIB90 subunit of RNA polymerase III transcription factor TFIIIB. J Biol Chem. 1996 Jun 21;271(25):14903–14909. doi: 10.1074/jbc.271.25.14903. [DOI] [PubMed] [Google Scholar]
- Rüth J., Conesa C., Dieci G., Lefebvre O., Düsterhöft A., Ottonello S., Sentenac A. A suppressor of mutations in the class III transcription system encodes a component of yeast TFIIIB. EMBO J. 1996 Apr 15;15(8):1941–1949. [PMC free article] [PubMed] [Google Scholar]
- Sherman F. Getting started with yeast. Methods Enzymol. 1991;194:3–21. doi: 10.1016/0076-6879(91)94004-v. [DOI] [PubMed] [Google Scholar]
- Stettler S., Mariotte S., Riva M., Sentenac A., Thuriaux P. An essential and specific subunit of RNA polymerase III (C) is encoded by gene RPC34 in Saccharomyces cerevisiae. J Biol Chem. 1992 Oct 25;267(30):21390–21395. [PubMed] [Google Scholar]
- Struhl K. Yeast transcriptional regulatory mechanisms. Annu Rev Genet. 1995;29:651–674. doi: 10.1146/annurev.ge.29.120195.003251. [DOI] [PubMed] [Google Scholar]
- Tan S., Garrett K. P., Conaway R. C., Conaway J. W. Cryptic DNA-binding domain in the C terminus of RNA polymerase II general transcription factor RAP30. Proc Natl Acad Sci U S A. 1994 Oct 11;91(21):9808–9812. doi: 10.1073/pnas.91.21.9808. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thuillier V., Brun I., Sentenac A., Werner M. Mutations in the alpha-amanitin conserved domain of the largest subunit of yeast RNA polymerase III affect pausing, RNA cleavage and transcriptional transitions. EMBO J. 1996 Feb 1;15(3):618–629. [PMC free article] [PubMed] [Google Scholar]
- Thuillier V., Stettler S., Sentenac A., Thuriaux P., Werner M. A mutation in the C31 subunit of Saccharomyces cerevisiae RNA polymerase III affects transcription initiation. EMBO J. 1995 Jan 16;14(2):351–359. doi: 10.1002/j.1460-2075.1995.tb07009.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang Z., Roeder R. G. Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains. Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):7026–7030. doi: 10.1073/pnas.92.15.7026. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang Z., Roeder R. G. Three human RNA polymerase III-specific subunits form a subcomplex with a selective function in specific transcription initiation. Genes Dev. 1997 May 15;11(10):1315–1326. doi: 10.1101/gad.11.10.1315. [DOI] [PubMed] [Google Scholar]
- Werner M., Chaussivert N., Willis I. M., Sentenac A. Interaction between a complex of RNA polymerase III subunits and the 70-kDa component of transcription factor IIIB. J Biol Chem. 1993 Oct 5;268(28):20721–20724. [PubMed] [Google Scholar]
- Werner M., Hermann-Le Denmat S., Treich I., Sentenac A., Thuriaux P. Effect of mutations in a zinc-binding domain of yeast RNA polymerase C (III) on enzyme function and subunit association. Mol Cell Biol. 1992 Mar;12(3):1087–1095. doi: 10.1128/mcb.12.3.1087. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wertman K. F., Drubin D. G., Botstein D. Systematic mutational analysis of the yeast ACT1 gene. Genetics. 1992 Oct;132(2):337–350. doi: 10.1093/genetics/132.2.337. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yamamoto R. T., Nogi Y., Dodd J. A., Nomura M. RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template. EMBO J. 1996 Aug 1;15(15):3964–3973. [PMC free article] [PubMed] [Google Scholar]