Table 2. Detail from the alignment of all contigs from the P.yoelii assembly at 5 × coverage to the completed chromosome 2 from P.falciparum.
| P.falciparum | P.yoelii contig | Contig ID | Length (bp) | Identity (%) | Similarity (%) | Frame | |||
|---|---|---|---|---|---|---|---|---|---|
| Start | End | Start | End | ||||||
| 587286 |
586992 |
384 |
81 |
a1160 |
295 |
47.1 |
72.1 |
–1 |
–3 |
| 587626 |
587374 |
652 |
418 |
a1160 |
253 |
55.8 |
76.7 |
–3 |
–2 |
| 588691 |
588271 |
1594 |
1180 |
a1160 |
421 |
64.3 |
80.4 |
–3 |
–2 |
| 590531 |
591386 |
820 |
1639 |
a1236 |
856 |
49.4 |
73.1 |
2 |
1 |
| 597754 |
598336 |
1496 |
2072 |
a3475 |
583 |
57.6 |
80.3 |
1 |
2 |
| 598867 |
599386 |
2729 |
3242 |
a3475 |
520 |
56.2 |
68.7 |
1 |
2 |
| 600503 |
600356 |
4990 |
4855 |
a3475 |
148 |
62.0 |
80.0 |
–2 |
–1 |
| 605666 |
606053 |
3844 |
3481 |
a2330 |
388 |
62.6 |
82.4 |
2 |
–3 |
| 606674 |
607832 |
3190 |
1987 |
a2330 |
1159 |
52.9 |
75.3 |
2 |
–3 |
| 608543 | 609323 | 1234 | 454 | a2330 | 781 | 62.8 | 80.8 | 2 | –3 |
The first two columns show the start and end of a subsequence in P.falciparum that aligns to a contig in P.yoelii at the positions given in columns three and four. The identifier of the contig is in column five, followed by the length of the alignment, percent identity and similarity of the translated protein sequence, and the reading frame in each of the DNA sequences that corresponds to the aligned proteins.