Table 1.
PCR oligonucleotides
Name | Sequence (5'→3')1 |
Gene-specific primers | |
G-UpF-GWL2 | TACAAAAAAGCAGGCTccgatcagttgcaacacatc |
G-UpR-Gm2 | TCAGAGCGCTTTTGAAGCTAATTCGttgttcctgcaccaccatct |
G-DnF-Gm2 | AGGAACTTCAAGATCCCCAATTCGccggcgagttccacctgaa |
G-DnR-GWR2 | TACAAGAAAGCTGGGTggttgagcttgctgtcgata |
Common primers | |
Gm-F | CGAATTAGCTTCAAAAGCGCTCTGA |
Gm-R | CGAATTGGGGATCTTGAAGTTCCT |
GW-attB1 | GGGGACAAGTTTGTACAAAAAAGCAGGCT |
GW-attB2 | GGGGACCACTTTGTACAAGAAAGCTGGGT |
1Sequences in capital letters are common for all genes amplified and overlap with the Gm or attB primer sequences. Lower-case letters indicate gene-specific sequences, here PA1520. PCR oligonucleotide sequences for all 27 genes amplified in this study are given in Table 2 (see Additional file 1).
2G, gene specific sequence, here PA1520.