Table 5. Python packages used for image and data analysis alongside the software version.
| Package | Version | Reference |
|---|---|---|
| pathlib | 1.0.1 | |
| numpy | 1.21.2 | Harris et al., 2020 |
| tifffile | 2021.7.2 | |
| pytorch | 1.13.0 | Paszke et al., 2019 |
| torchvision | 0.14.0 | |
| nd2reader | 3.3.0 | |
| matplotlib | 3.5.2 | Hunter, 2007 |
| scikit-image | 0.19.3 | Van der Walt et al., 2014 |
| scikit-learn | 1.1.3 | Pedregosa et al., 2011 |
| argparse | 1.4.0 | |
| cellpose | 2.1.1 | Stringer et al., 2021 |
| tqdm | 4.64.1 | |
| scipy | 1.9.3 | Virtanen et al., 2020 |
| pandas | 1.5.1 | McKinney, 2010 |
| seaborn | 0.12.1 | Waskom et al., 2022 |
| imbalanced-learn | 0.10.0 | Lemaître et al., 2017 |
| StarDist | 0.8.5 | Weigert et al., 2020 |