Table 4.

QTL significantly associated to stripe rust resistance at the seedling stage tested with races of Puccinia striiformis f. sp. tritici (Pst) and at the adult-plant stage under the natural infection of the pathogen in various field environments (years and locations) in the winter wheat panel.

QTL name	SNP marker	Test stage a	Race or field environ._trait b	Genetic position (cM) c	-log10(P)	MAF	Allele d	R 2e	Effect	Reported Yr genes/QTL f	Reference
QYrWW.wgp-1A.1	IWA2995	Adult	16PCFS_IT	79.75	3.7	0.35	T/ C	0.14	-0.72	QYr.sun-1A Yrzhong12-2	Bariana et al., 2010; Ma et al., 2014
	IWA1608	Adult	09PCFS_rDS	82.04	3.8	0.31	T/G	0.2	7.47
QYrWW.wgp-1A.2	IWA6710	Adult	16PCFS_rDS	99.03	3.3	0.06	T/G	0.14	14.69	QYrww.wgp.1A-2	Mu et al., 2020
	IWA6710	Adult	16SP_rDS	99.03	3.2	0.06	T/G	0.23	15.16
QYrWW.wgp-1B	IWB11262	Seedling	PSTv-4_IT	9.41	3.8	0.22	T /C	0.29	-0.74	QYr.cau-1BS	Quan et al., 2013
	IWB11262	Seedling	PSTv-14_IT	9.41	3	0.22	T /C	0.16	-0.61
	IWB11262	Seedling	PSTv-37_IT	9.41	3.7	0.22	T /C	0.22	-0.73
QYrWW.wgp-1D	IWB15847	Adult	08MV_IT	47.66	4	0.25	T/ C	0.11	-0.76	Qyr.ucw-1D QYrww.wgp.1D-3	Maccaferri et al., 2015; Mu et al., 2020
	IWA362	Adult	13SP_rDS	48.81	3.4	0.42	T/ C	0.08	-6.03
	IWB10919	Adult	08MV_IT	54.49	3.4	0.19	T/ C	0.09	-0.81
QYrWW.wgp-2A.1	IWB14868	Adult	17MV_IT	3.75*	3.6	0.4	T /C	0.22	-0.45	QYrtm.pau-2A QYr.uga-2AS QYr.ufs-2A QYrva.vt- 2AS QYr.sun-2A QYr.ucw-2A.2 Qyr.wpg-2A.2 QYrSW.wgp-2A.1	Chhuneja et al., 2008; Hao et al., 2011; Agenbag et al., 2012; Christopher et al., 2013; Bansal et al., 2014; Maccaferri et al., 2015; Naruoka et al., 2015; Liu et al., 2020
	IWB22615	Adult	19SP_rDS	3.94	3.9	0.35	T/C	0.19	8.52
	IWB42693	Adult	18MV_IT	9.91	3.3	0.23	A/C	0.14	0.69
	IWB42693	Adult	18MV_rDS	9.91	4.7	0.23	A/C	0.2	12.48
	IWB42693	Adult	18PCFS_rDS	9.91	3.2	0.23	A/C	0.12	6.84
	IWB42693	Adult	19MV_IT	9.91	3.8	0.23	A/C	0.11	0.77
	IWB42693	Adult	19MV_rDS	9.91	3.3	0.23	A/C	0.16	8.57
	IWB42693	Adult	19SP_rDS	9.91	6.2	0.23	A/C	0.21	9.84
	IWB42693	Adult	21MV_IT	9.91	4.6	0.23	A/C	0.26	0.96
	IWB42693	Adult	21MV_rDS	9.91	6.7	0.23	A/C	0.3	13.58
QYrWW.wgp-2A.2	Yr17-KASP	Adult	BLUE_rDS	NA	3.2	0.35	A/G	0.28	4.05	Yr17 closely linked markers	Wang and Chen, 2017
	Yr17-KASP	Adult	18MV_IT	NA	3.3	0.35	A/G	0.14	0.45
	Yr17-KASP	Adult	18MV_rDS	NA	5.4	0.35	A/G	0.21	8.855
	Yr17-KASP	Adult	18PCFS_IT	NA	5.3	0.35	A/G	0.22	0.672
	Yr17-KASP	Adult	18PCFS_rDS	NA	4.5	0.35	A/G	0.13	5.32
	Yr17-KASP	Adult	19MV_IT	NA	5.1	0.35	A/G	0.13	0.59
	Yr17-KASP	Adult	19MV_rDS	NA	5.4	0.35	A/G	0.18	7.52
	Yr17-KASP	Adult	19SP_rDS	NA	6.2	0.35	A/G	0.21	6.47
	Yr17-KASP	Adult	20MV_rDS	NA	3.1	0.35	A/G	0.2	5.1
	Yr17-KASP	Adult	21MV_IT	NA	3.7	0.35	A/G	0.25	0.55
	Yr17-KASP	Adult	21MV_rDS	NA	7.9	0.35	A/G	0.31	9.83
	Yr17-KASP	Adult	12SP_IT	NA	3.2	0.11	A/G	0.11	0.78
QYrWW.wgp-2B	IWB72086	Adult	BLUE_rDS	91.6	3.3	0.05	A/G	0.28	8.52	QYrid.ui-2B.1	Chen et al., 2012
	IWB72086	Adult	19MV_rDS	91.6	3.5	0.05	A/G	0.16	12.36
	IWB72086	Adult	21MV_IT	91.6	3	0.05	A/G	0.25	1.04
	IWB72086	Adult	21MV_rDS	91.6	4.7	0.05	A/G	0.29	15.41
QYrWW.wgp-3B	IWB5332	Adult	16PCFS_IT	74.37	4	0.22	T/C	0.14	-0.97	QYr.uga-3BS.2 QYr.uga-3BS.3	Hao et al., 2011
	IWB10937	Adult	18PCFS_IT	75.23	3	0.36	T/C	0.2	0.54
QYrWW.wgp-3D	IWB64376	Adult	11PCFS_IT	144.18*	4.2	0.32	T/C	0.11	0.43	NDh
	IWB64376	Adult	11PCFS_rDS	144.18*	3.6	0.32	T/C	0.12	6.4
	IWB52592	Adult	12PCFS_rDS	148.48*	3.2	0.37	A/G	0.19	14.38
QYrWW.wgp-4A	IWB57645	Adult	08SP_IT	152.71	3.3	0.29	T/ C	0.19	-1.16	QYrww.wgp.4A-3	Mu et al., 2020
	IWB39715	Adult	09SP_IT	158.57	3.1	0.17	T/C	0.24	0.44
	IWB39715	Adult	13SP_rDS	158.57	3.3	0.17	T/C	0.08	9.26
QYrWW.wgp-4B	IWB59186	Adult	11SP_IT	41.52	3.2	0.46	A /G	0.08	-3.65	New
	IWB59186	Adult	16MV_rDS	41.52	3.1	0.46	A /G	0.16	-40.54
QYrWW.wgp-4D	Kasp856	Adult	BLUE_IT	NA	3.9	0.05	A /G	0.25	-1.14	Yr46	Herrera-Foessel et al., 2011
	Kasp856	Adult	BLUE_rDS	NA	5.4	0.05	A /G	0.3	-14.56		Forrest et al., 2014
	Kasp856	Adult	18MV_rDS	NA	3.4	0.05	A /G	0.19	-18.36
	Kasp856	Adult	18PCFS_rDS	NA	6.6	0.05	A /G	0.15	-19.23
	Kasp856	Adult	19MV_rDS	NA	4.5	0.05	A /G	0.17	-18.66
	Kasp856	Adult	20MV_IT	NA	3.2	0.05	A /G	0.15	-1.45
	Kasp856	Adult	20MV_rDS	NA	3.7	0.05	A /G	0.21	-16.74
	Kasp856	Adult	21MV_rDS	NA	3	0.05	A /G	0.28	-15.11
QYrWW.wgp-5B.1	IWB46807	Adult	19PCFS_rDS	164.11	3.6	0.36	T /C	0.22	-9.3	QYr.caas-5BL.2 QYr.sun-5B	Lu et al., 2009; Bariana et al., 2010
	IWB6746	Adult	12MV_IT	164.84	3.4	0.22	T/C	0.14	0.72
QYrWW.wgp-5B.2	IWB29548	Adult	19PCFS_rDS	232.94	4	0.08	T/C	0.22	12.69	QYr.sun-5B	Bansal et al., 2014
	IWB29548	Adult	07MV_IT	232.94	3.1	0.07	T/C	0.25	-0.89
QYrWW.wgp-5B.3	IWA4280	Adult	10SP_IT	124.06	3	0.1	T /C	0.07	-1.94	QYrSW.wgp-5B.2	Liu et al., 2020
	IWA4280	Adult	10SP_rDS	124.06	3	0.1	T /C	0.2	-16.37
	IWA4280	Adult	11MV_IT	124.06	3	0.1	T /C	0.06	-0.87
	IWA4280	Adult	11MV_rDS	124.06	3.7	0.1	T /C	0.13	-15.92
QYrWW.wgp-5D	IWA4561	Seedling	PSTv-51_IT	183.39	3.1	0.29	T /C	0.21	0.77	QYrbr.wpg-5D	Case et al., 2014
QYrWW.wgp-6A.1	IWB41817	Seedling	PSTv-4_IT	16.17	3.4	0.15	A/ C	0.29	-0.63	QYrex.wgp-6AS QYr.uga-6AS	Lin and Chen, 2009; Hao et al., 2011
	IWB41817	Seedling	PSTv-14_IT	16.17	3.2	0.15	A/ C	0.16	-0.56
	IWB41817	Seedling	PSTV-40_IT	16.17	3.5	0.15	A/ C	0.4	-0.61
	IWB41817	Seedling	PSTv-51_IT	16.17	3.1	0.15	A/ C	0.2	-0.52
QYrWW.wgp-6A.2	IWB29623	Seedling	PSTv-14_IT	40.53	3.9	0.29	T/C	0.17	-0.81	New
	IWB29623	Seedling	PSTv-51_IT	40.53	3.3	0.29	T/C	0.2	-0.7
QYrWW.wgp-6A.3	IWB22698	Adult	BLUE_rDS	98.55	3.7	0.25	A/C	0.29	5.32	QYr.cim-6AL 6AL-QTL	Lillemo et al., 2008; Lan et al., 2014
	IWB22698	Adult	18MV_rDS	98.55	3	0.25	A/C	0.19	7.68
	IWB22698	Adult	18PCFS_rDS	98.55	3.9	0.25	A/C	0.13	6.33
	IWB22698	Adult	20MV_rDS	98.55	3	0.25	A/C	0.2	6.47
	IWB22698	Adult	21MV_IT	98.55	3.1	0.25	A/C	0.25	0.62
	IWB22698	Adult	21MV_rDS	98.55	3.6	0.25	A/C	0.28	7.62
QYrWW.wgp-6A.4	IWA6484	Adult	BLUE_rDS(175)	183.95	3.2	0.41	A/ G	0.15	-7.86	QYrww.wgp.6A-2	Mu et al., 2020
	IWA6484	Adult	12PCFS_rDS	183.95	3.1	0.41	A/ G	0.19	-15.58
QYrWW.wgp-6B	IWB38887	Adult	07PCFS_rDS	142.56	3.5	0.49	T/C	0.19	4.69	Qyr.wpg-6B.2	Naruoka et al., 2015
	IWA6179	Adult	15MV_IT	144.27	3.2	0.22	A/ G	0.14	-0.54
	IWA6179	Adult	15MV_rDS	144.27	3.1	0.22	A/ G	0.16	-5.52
	IWA3224	Adult	08SP_rDS	150.01	3.2	0.24	T /C	0.17	-4.06
QYrWW.wgp-6D.1	IWB4284	Seedling	PSTV-40_IT	20.75	3.7	0.18	A/ C	0.4	-0.64	New
QYrWW.wgp-6D.2	IWA3624	Adult	19MV_IT	82.14	3.4	0.22	T/ G	0.11	-0.55	QYr.ufs-6D QYr.ucw-6D QYrSW.wgp-6D	Agenbag et al., 2012; Maccaferri et al., 2015; Liu et al., 2020
	IWA3624	Adult	19MV_rDS	82.14	3.3	0.22	T/ G	0.16	-6.49
	IWA7816	Adult	20PCFS_IT	87.17	3.1	0.23	T/C	0.21	0.8
	IWA7816	Adult	20PCFS_rDS	87.17	3	0.23	T/C	0.26	8.08
QYrWW.wgp-6D.3	IWB5832	Seedling	PSTV-198_IT	150.56	3.9	0.26	T/C	0.21	0.69	6DS-QTL	Zegeye et al., 2014
	IWB5832	Seedling	PSTV-51_IT	150.56	3.3	0.26	T/C	0.29	0.61
QYrWW.wgp-7A.1	IWB44935	Adult	17SP_rDS	155.85	3.1	0.39	T /C	0.1	-7.43	New
	IWB11533	Adult	14SP_rDS	156.97	4.5	0.13	A/ G	0.18	-18.44
QYrWW.wgp-7A.2	IWA8393	Seedling	PSTV-40_IT	164.7	3.1	0.32	T /C	0.4	-0.51	New
QYrWW.wgp-7B.1	IWB41262	Adult	19PCFS_rDS	93.82	4.6	0.13	A/C	0.22	11.73	Yr39	Lin and Chen, 2007
	IWB41262	Adult	07MV_IT	93.82	3.2	0.09	A/C	0.26	-0.85
QYrWW.wgp-7B.2	IWA320	Adult	17MV_rDS	106.15	3.1	0.24	A/G	0.3	7.34	QYr.sun-7B QYr.caas-7BL.1	Bariana et al., 2010
	IWA320	Adult	17PCFS_rDS	106.15	3.6	0.24	A/G	0.13	12.53		Ren et al., 2012

MAF, minor allele frequency.

^aAdult, stripe rust response recorded at the adult-plant stage in the field tests; Seedling, seedling tests with different Pst races in the greenhouse.

^b07-21, the years of 2007 to 2021; BLUE, best linear unbiased estimator; MV, Mount Vernon; PCFS, Palouse Conservation Field Station; SP, Spillman; IT, infection type; rDS, relative disease severity (%).

^cGenetic distance, the genetic position corresponds to the genetic position in the integration map of Maccaferri et al. (2015), and the marker position with * corresponds to the position in the 90K consensus map of Wang et al. (2014).

^dBold indicates the minor allele; underline indicates the favorable allele.

^ePhenotypic variance explained by the significant associated marker.

^fNew, the presumably new QTL.

^hND, not determined.