MDE	Multiple differential expression
MA plots	M versus A plots
PCA plots	Principal component analysis
DGEA	Differential gene expression analysis
MDS	Multidimensional scaling
circRNAs	Circular RNAs
BSJ	Back-splicing junction
UMAP	Uniform manifold approximation and projection for dimension reduction
t-SNE	t-distributed stochastic neighbor embedding
fcircRNAs	Fusion-derived circular RNAs
MREs	MicroRNA response elements
RBP	RNA-binding protein
ORF	Open reading frame
miRNAs	MicroRNA
GoM	Grade of membership
K	Number of clusters
GUI	Graphical user interface
GSEA	Gene set enrichment analysis
BEAVR	Browser-based tool for the exploration and visualization of RNA-seq data.
scRNA-seq	Single-cell RNA sequencing
VAE	Deep variational autoencoder
SWNE	Similarity-weighted non-negative embedding
ssPCA	Semisupervised principal component analysis
DTAE	Density tree-biased autoencoder
FIt-SNE	Fast interpolation-based t-SNE
CP-PaCMAP	Compactness preservation pairwise controlled manifold approximation projection
WASP	Web-accessible single-cell RNA-seq processing platform
CA	Correspondence analysis
DV	Deep visualization
net-SNE	Neural t-distributed stochastic neighbor embedding
SCUBI	Single-cell unbiased
autoCell	Autoencoder network algorithm