Table 2.
Relative abundances of investigated proteins between Zn-depleted and Zn-replete conditions (LFC = log2(Zn-depleted/Zn-replete)) and associated statistical measures.
| Locus Tag | Protein Name | DDA | DIA | ||||
|---|---|---|---|---|---|---|---|
|
| |||||||
| LFC | p-value | Cohen’s d | LFC | p-value | Cohen’s d | ||
|
| |||||||
| PA0781 | ZnuD | 9.477 | 0.031 | 4.528 | 6.692 | 0.04 | 3.964 |
| PA0958 | OprD | 0.984 | 0.072 | 1.995 | 0.743 | 0.063 | 2.107 |
| PA1922 | - | 5.341 | 0.038 | 3.961 | 4.141 | 0.128 | 2.048 |
| PA1923 | - | 3.92 | 0.287 | 1.096 | 3.852 | 0.076 | 2.757 |
| PA1925 | - | - | - | - | 4.172 | 0.149 | 1.856 |
| PA2435 | - | 2.87 | 0.052 | 2.955 | 2.903 | 0.121 | 2.098 |
| PA2437 | - | 1.712 | 0.423 | 0.567 | - | - | - |
| PA2438 | HflC | 4.945 | 0.011 | 6.284 | 3.601 | 0.053 | 3.366 |
| PA2439 | HflK | 2.734 | 0.184 | 1.387 | 3.788 | 0.065 | 3.015 |
| PA2505 | OpdT | −3.927 | 0.055 | 2.984 | −2.787 | 0.181 | 1.639 |
| PA2520 | CzcA | −4.406 | 0.13 | 1.94 | −1.924 | 0.103 | 2.226 |
| PA2521 | CzcB | −4.396 | 0.203 | 1.452 | −3.476 | 0.112 | 2.221 |
| PA2522 | CzcC | −2.583 | 0.041 | 3.268 | - | - | - |
| PA2523 | CzcR | −1.446 | 0.423 | 0.517 | - | - | - |
| PA2524 | CzcS | - | - | - | 0.045 | 0.939 | 0.07 |
| PA2911 | - | 5.212 | 0.12 | 2.081 | 5.728 | 0.094 | 2.475 |
| PA2913 | - | 2.855 | 0.309 | 0.95 | 6.686 | 0.077 | 2.767 |
| PA3438 | FolE1 | 0.752 | 0.748 | 0.285 | - | - | - |
| PA3527 | PyrC1 | −1.69 | 0.039 | 3.063 | −0.396 | 0.56 | 0.52 |
| PA3574.1 | CopZ2 | −1.255 | 0.054 | 2.207 | −1.299 | 0.225 | 1.277 |
| PA3601 | RpmE2 | 1.39 | 0.423 | 0.505 | 4.841 | 0.044 | 3.714 |
| PA3690 | CadA/ZntA | −6.113 | 0.013 | 7.029 | −3.332 | 0.002 | 11.541 |
| PA4022 | HdhA | −7.787 | 0.015 | 6.488 | −2.000 | 0.064 | 2.127 |
| PA4063 | - | 7.291 | 0.017 | 6.233 | 5.857 | 0.019 | 5.856 |
| PA4064 | - | 4.302 | 0.361 | 0.911 | - | - | - |
| PA4065 | - | 4.87 | 0.068 | 2.873 | 4.305 | 0.005 | 11.119 |
| PA4066 | - | 1.39 | 0.423 | 0.505 | 3.202 | 0.132 | 1.993 |
| PA4381 | ColR | −3.172 | 0.07 | 2.596 | −4.548 | 0.362 | 0.958 |
| PA4723 | DksA | −1.356 | 0.055 | 3.07 | −0.03 | 0.969 | 0.035 |
| PA4837 | CntO/ZrmA | 5.981 | 0.017 | 6.098 | 4.642 | 0.018 | 5.666 |
| PA5049 | RpmE | −1.156 | 0.068 | 2.164 | −2.966 | 0.093 | 2.462 |
| PA5105 | HutC | −0.403 | 0.423 | 0.199 | −0.581 | 0.406 | 0.759 |
| PA5499 | Zur | −3.503 | 0.066 | 2.757 | −0.181 | 0.703 | 0.344 |
| PA5531 | - | 3.22 | 0.004 | 11.162 | 1.077 | 0.183 | 1.526 |
| PA5534 | - | 3.478 | 0.423 | 0.743 | 4.255 | 0.056 | 3.309 |
| PA5535 | ZigA | 6.304 | 0.045 | 3.662 | 5.838 | 0.084 | 2.639 |
| PA5536 | DksA2 | 1.712 | 0.423 | 0.567 | 0.867 | 0.413 | 0.746 |
| PA5539 | FolE2 | 3.214 | 0.212 | 1.318 | - | - | - |
| PA5540 | - | 3.802 | 0.077 | 2.562 | - | - | - |
| PA5541 | PyrC2 | 0.434 | 0.423 | 0.212 | - | - | - |
P-values were determined through a heteroscedastic two-tailed t-test. Bolded values exceed desired statistical thresholds of p-value < 0.1 and effect size > 2.5. Missing values indicate the protein in question was not detected by that methodology.