TABLE 3.
Molecular dynamics simulation properties of native proteins and molecules of interest.
| Receptor | Name | RSMF | RSM D | rGyr | SASA | MolSA | PSA |
|---|---|---|---|---|---|---|---|
| 8FZM | Catechin glucoside | 1.496±0.67 | 2.013±0.25 | 4.884±0.14 | 276.40±39.10 | 377.11±2.92 | 363.75±711 |
| Drevogenin D | 1.397±0.51 | 0.761±0.18 | 3.805±0.02 | 283.57±1.92 | 315.57±1.92 | 171.18±6.64 | |
| 8FZM-alone | 1.441±0.51 | 2.861±0.47 | |||||
| 7K7U | Catechin glucoside | 2.336±0.81 | 1.330±0.24 | 5.141±0.07 | 257.82±38.06 | 381.25±2.15 | 371.54±6.07 |
| Drevogenin D | 4.868±1.41 | 0.635±0.12 | 3.769±0.02 | 438.25±117.3 | 314.38±1.80 | 161.52±3.71 | |
| 7K7U-alone | 3.215±1.39 | 10.14±1.60 |
Note: the Angstrom unit (Å) was used to measure the mean ± SEM of the values. rGyr, radius of gyration; RMSD, root mean square deviation; RMSF, root mean square fluctuation; PSA, pressure swing adsorption; SASA, solvent-accessibility surface area; MolSA, molecular surface area.