Abstract
Bromoviridae is a family of plant viruses with tripartite, positive-sense RNA genomes of about 8 kb in total. Genomic RNAs are packaged in separate virions that may also contain sub-genomic, defective or satellite RNAs. Virions are variable in morphology (spherical or bacilliform) and may be transmitted between hosts mechanically, via pollen, or non-persistently by insect vectors. Members of the family are responsible for major disease epidemics in fruit, vegetable and fodder crops such as tomatoes, cucurbits, bananas, fruit trees, common beans and alfalfa. Since the adoption of metagenomic high-throughput sequencing methodologies, there has been a notable increase in the number of species in the genus Ilarvirus. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Bromoviridae, which is available at ictv.global/report/bromoviridae.
Keywords: Bromoviridae, ICTV Report, taxonomy
Virion
Virions are either spherical or quasi-spherical (Table 1 and Fig. 1), having T=3 icosahedral symmetry and a diameter of 26–35 nm (genera Anulavirus, Bromovirus, Cucumovirus and Ilarvirus), or bacilliform (genera Alfamovirus, Ilarvirus and Oleavirus) with dimensions of 18–26 nm by 30–85 nm. Genomic RNAs are packaged in separate virions that may also contain sub-genomic, defective or satellite RNAs [1].
Table 1. Characteristics of members of the family Bromoviridae.
Example: | brome mosaic virus (RNA1: X02380; RNA2: X01678; RNA3: J02042), species Bromovirus BMV |
Virion | Spherical or quasi-spherical (26–35 nm diameter) or bacilliform (18–26 nm by 30–85 nm) particles |
Genome | Three segments of linear, positive-sense RNA, comprising about 8 kb in total |
Replication | On cytoplasmic membranes with genomic RNAs acting as mRNAs; coat protein may be required for genome activation |
Translation | Directly from genomic or sub-genomic RNA |
Host range | Broad or restricted range of plants depending on the virus species |
Taxonomy | Realm Riboviria, kingdom Orthornavirae, phylum Kitrinoviricota, class Alsuviricetes, order Martellivirales; >5 genera, including >45 species |
Fig. 1. Particles of cucumber mosaic virus. (a) Negative-contrast electron micrograph (bar 50 nm, courtesy of A. De Stradis, IPSP-CNR, Bari, Italy) and (b) reconstruction (courtesy of Dr K.L. Perry, Cornell University, Ithaca, New York, USA, Dr T. Smith, University of Texas, Galveston, Texas, USA, and A. Paredes, NCTR/ORA, Arkansas, USA).
Genome
The genome of about 8 kb is split among three linear, positive-sense RNAs that have 5′-terminal cap structures (Fig. 2). The 3′-termini either form tRNA-like structures that can be aminoacylated (genera Bromovirus and Cucumovirus) or other structures that are not aminoacylated (genera Alfamovirus, Anulavirus, Ilarvirus and Oleavirus).
Fig. 2. Generalized genome organization for members of the family Bromoviridae. Mtr/H, methyltransferase and helicase; RdRP, RNA-directed RNA polymerase; MP, movement protein; CP, coat protein. 2b protein only in some cucumoviruses and ilarviruses. Readthrough product of CP ORF (RT) only in some ilarviruses [6].
Replication
Replication of genomic and sub-genomic RNAs occurs on cytoplasmic membranes via full-length negative-sense RNA synthesis and subsequent positive-sense RNA synthesis. Coat protein may be required for the activation of replication (Alfamovirus and Ilarvirus); the ratio of cytoplasmic/nuclear coat protein accumulation modulates viral gene expression (Alfamovirus) [1].
Pathogenicity
Alfalfa mosaic virus (genus Alfamovirus) infects many herbaceous and some woody hosts, inducing systemic mottling and ‘calico’ mosaic. Pelargonium zonate spot virus (genus Anulavirus) infects tomato plants, which display stunting, concentric chlorotic or necrotic rings and line patterns on leaves, stems and fruit [2]. Members of the genus Bromovirus infect some Poaceae or Fabaceae and elderberry, inducing mosaic, brown streaks and reduced seed yield. Some strains of cucumber mosaic virus (genus Cucumovirus) support a 330–390 nt satellite RNA that may induce necrosis in tomato, chlorosis in tomato, tobacco and pepper or attenuate disease symptoms. Hosts include fruit crops, vegetables, ornamentals and weeds [3]. Members of the genus Ilarvirus infect fruit trees and some herbaceous crops. Prunus necrotic ringspot virus and prune dwarf virus cause stunting and necrotic lesions on the leaves of sweet cherry, sour cherry, plum and peach trees [4]. Olive latent virus 2 (genus Oleavirus) has been recorded in olive and in castor beans. Infections are asymptomatic in olive but produce a yellowish vein netting and mottling of the leaves of castor bean plants [5].
Taxonomy
Current taxonomy: ictv.global/taxonomy. Genus assignments are based on virus host range, genome content and vector. With the exception of Ilarvirus and Oleavirus, members of a genus are monophyletic by phylogenetic analysis of the RNA-directed RNA polymerase. Virus transmission is by aphids (members of the genera Alfamovirus and Cucumovirus), thrips and/or pollen (Anulavirus and Ilarvirus), beetles (Bromovirus) or is unknown (Oleavirus). Species demarcation criteria include natural host range, mode of transmission, particle morphology and physicochemical properties, genome structure and replication strategies, an ability to support replication of defective RNAs and satellite RNAs, and <85% amino acid identity for the whole 2a protein.
Resources
Full ICTV Report on the family Bromoviridae: www.ictv.global/report/bromoviridae.
Acknowledgements
The authors thank Evelien Adriaenssens, Luisa Rubino, ICTV Report Editors and Donald B. Smith (Managing Editor, ICTV Report).
Abbreviations
- ICTV
International Committee on Taxonomy of Viruses
- RdRP
RNA-directed RNA polymerase
Footnotes
Funding: Production of this summary, the online chapter and associated resources was supported by the Microbiology Society.
Contributor Information
Jeremy R. Thompson, Email: jeremy.thompson@mpi.govt.nz.
Tomás Canto, Email: tomas.canto@cib.csic.es.
John P. Carr, Email: jpc1005@cam.ac.uk.
Vicente Pallás, Email: vpallas@ibmcp.upv.es.
Dana Šafářová, Email: dana.safarova@upol.cz.
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