Table 2.
Five single-cell RNA-seq datasets for constructing simulated bulk RNA-seq data.
| Accession ID | Abbreviation | Tissue/Organ | Platform | Samples | Cell types | Cells | Genes | Median counts/Cell | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | E-MTAB-8142 | SKIN | Healthy skin | 10× Chromium | 3 | 22 | 79,583 | 12 704 | 6527 |
| 2 | GSE146771 | CRC | Colon cancer | Smart-seq2 | 10 | 8(24) | 10,456 | 15 160 | 19 952 |
| 3 | GSE111672 | PDAC | Pancreas | inDrop | 2 | 15(18) | 3659 | 19 736 | 2541 |
| 4 | aldinger20 | CERE | Cerebellum | SPLiT-seq | 5 | 21 | 4462 | 29 523 | 747.5 |
| 5 | GSE158291 | PTC | Thyroid carcinoma | BD Rhapsody | 4 | 7 | 3552 | 14 305 | 2091 |
Numbers in parentheses indicate the number of cell types after cell population subdivision.