Abstract
Background
Human papillomavirus (HPV) and human immunodeficiency virus (HIV) co-infection present a significant impact on women's health globally, especially in immunocompromised individuals. HIV-induced immunosuppression promotes the persistence of high-risk HPV infection and increased the progression to cervical cancer. The aim of this systematic review was to assessed the impact of HPV/HIV co-infection on the prevalence and distribution of HR-HPV genotypes, the level of immunosuppression and expression of cervical cancer biomarkers.
Method
The article selection method for this review was based on the 2020 Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) standards. The total of eighty-four (84) articles from standard electronic databases mainly Web of Science, PubMed, and Scopus were extracted and reviewed. The articles were published in English between 2008 and 2024 and comprised a total of 80023 participants.
Results
The HR-HPV genotypes reported across various studies include HPV16, 18, 31, 33, 35, 39, 45, 51, 52, 53, 54, 56, 58, 59, 66, 68, 70, 73, and 82. Among HIV positive individuals, the most common circulating HR-HPV genotypes were HPV16, 18, 45, 35, and 58, accounted for 11%, 10%, 9%, 8%, and 8% of cases, respectively. Approximately 29.1% and 30.0% of patients had CD4 counts of 200–400 cells/L and 300–400 cells/L, respectively. The most commonly reported cervical cancer biomarkers were p16INK4a and Ki-67, according to the analysis.
Conclusion
The findings indicate high prevalence of multiple HR-HPV genotypes among HIV positive individuals, indicating the impact of HPV/HIV co-infection on immunosuppression and persistence of HPV infection. The expression of cervical cancer biomarker such as p16INK4a and Ki-67 emphasized target screening and early detection strategy in high-risk population. However, there was no direct impact of HPV/HIV co-infection reported on these biomarkers and required to be studied more especially in people living with HIV.
Keywords: Human papillomavirus, Human immunodeficiency virus, Immunosuppression, Cervical cancer Biomarkers, Genotypes
Highlights
◦ An analysis revealed a significant occurrence of high-risk HPV genotypes, namely HPV16, 18, and 45, among women who had HIV.
◦ In comparison to HIV-negative women, HIV-positive women had a higher probability of experiencing persistent HPV infections and more severe cervical lesions.
◦ Significant correlations were seen between CD4 levels and the occurrence of high-risk HPV infections, suggesting the involvement of immunosuppression in the persistence of HPV.
◦ Cervical cancer biomarkers reported across various studies were p16INK4a and Ki-67, despite these biomarkers reported there was no established direct impact of HPV/HIV co-infection to indicate aggressive disease development.
◦ The results suggest the need for implementation of focused screening and vaccination programs for cervical cancer in populations at high risk, particularly among women who are HIV-positive.
Introduction
Human papillomavirus (HPV) and HIV co-infection present a serious public health problem globally. HPV/HIV co-infection is especially prevalent among women in low-income countries, where healthcare access and preventive measures are frequently inadequate [48]. HPV, a double-stranded circular DNA virus is a well-known carcinogen factor associated with cervical cancer development [25]. High-risk HPV genotypes, particularly HPV 16 and 18, account for about 80% of cervical cancer cases globally [65]. Researchers have identified and grouped over 200 HPV genotypes based on their ability to induce cervical cancer [47]. High risk HPV genotypes such as HPV16, 18, 31,32, 33, 34, 35, 36, 39, 45, 51, 52, 53, 54, 55, 56, 57, 58, 59, 66, 68 and 82. They are linked with development of moderate to high-grade cervical lesions and cervical cancers eventually [6]. Cervical cancer is the fourth most common cancer among women worldwide, with approximately 75,000 new cases and 50,000 deaths reported, with the vast majority in Sub-Saharan Africa [68]. HIV infection significantly increases the risk of HPV infection, persistence, and rapid progression to cervical cancer, resulting in higher cervical cancer prevalence [32]. HPV/HIV co-infection is increasingly prevalent in high-HIV-burden regions like Sub-Saharan Africa, driven by shared transmission routes and the immune suppression caused by HIV [18]. HIV infection produces significant immunosuppression, as evidence by CD4 + T cells declination limiting the body's ability to generate an effective immunological response to HPV infection [27]. As a result, HIV-positive women are more susceptible to persistent HPV infections, increasing their risk of developing high-grade cervical intraepithelial neoplasia (CIN) and invasive cervical cancer [7].
CD4 + T cells are essential in coordinating adaptive immunity, mediate the HPV-related immune response to HPV infection [50]. However, HIV targets and depletes CD4 + T cells, reducing the body’s ability to clear HPV infections allowing HPV persistence and rapid progression of cervical dysplasia and cancer [28]. Research also suggests that HIV infection can cause alteration in the natural history of HPV infection and accelerates the development of cervical cancer [14]. Furthermore, HPV oncogenes, particularly E6 and E7, play an important role in the development of cervical dysplasia and cancer [57]. By targeting tumor suppressor proteins like p53 and pRB, the E6 and E7 proteins disrupt important tumor-suppressor pathways leading to uncontrolled cell growth and genomic instability [51]. HIV co-infection can increase viral oncogene expression dysregulation, which leads to more cells dividing and genetic instability, making cervical lesions more complicated [58]. Moreover, HIV-induced inflammation and alterations in the cervical microenvironment promote the development of cervical cancer [40]. Chronic inflammation enhanced the growth of new cells, the formation of new blood vessels, and the remodeling of tissues creating an environment that is favorable for HPV-associated cancer development [10]. Unbalanced DNA methylation and histone modifications increase the risk of cervix cancer by altering gene expression and promoting tumor growth [33]. Additionally, cervical cancer lesions in women with HPV/HIV co-infection are more severe and progress faster than in HPV mono-infection [65]. Cervical cancer lesions in women with HPV/HIV co-infection are more severe, progress faster, and are associated with a higher likelihood of cytological abnormalities, such as atypical squamous cells and high-grade squamous intraepithelial lesions, indicating disease progression [16].
Biomarkers such as p16INK4a and Ki-67 are useful predictors of aggressive cervical cancer progression in HPV/HIV co-infections [33]. In co-infected patients, higher expression of these biomarkers is associated with higher tumor aggressiveness, metastatic potential, and poorer clinical outcomes [76]. Finally, understanding the immunological, molecular, and clinical interaction between HPV and HIV is key in developing new ways to treat cervical cancer in co-infected patients [53].
Method
Search strategy
The research team conducted a comprehensive literature search and critically analyzed studies that examined the impact of HPV/HIV co-infection, focusing on key aspects such as immunosuppression, the distribution and prevalence of high-risk HPV genotypes, and the expression of cervical cancer biomarkers. The team reviewed both contemporary and older papers on immunosuppression, HPV genotypes, and cervical cancer biomarkers. This comprehensive search was conducted between 1st of March 2024 to 15th of August, 2024, using numerous databases namely; Web of Science, Scopus, and PubMed. The search technique used for Web of Science and Scopus was: ("human papillomavirus" OR HPV) AND ("Human immunodeficiency virus" OR HIV) AND ("suppress OR "Immune suppress" OR genotype OR biomarker") AND ("cervical cancer"). For PubMed, the search string used was: ((human papillomavirus [Title/Abstract] OR HPV [Title/Abstract]) AND (human immunodeficiency virus [Title/Abstract] OR HIV [Title/Abstract]) AND (Immunosuppress [Title/Abstract] OR Immune suppress [Title/Abstract] OR genotype [Title/Abstract] OR biomarker [Title/Abstract]) AND (cervical cancer [Title/Abstract]) NOT (review [Publication Type])). The search only included peer-reviewed literature published in English. The article selection method was based on the 2020 Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) standards refer to Fig. 1 for the PRISMA flow chart.
Fig. 1.
PRISMA eligibility flow chart
Inclusion and exclusion criteria
Original articles conducted among women with HPV/HIV co-infection, studies that reported CD4 counts and biomarkers such as Ki-67 and P16 were included in the study. Studies conducted on men or those that did not report HPV and HIV co-infection, with insufficient data on immunosuppression, HPV genotypes, or cervical cancer biomarkers were excluded. Review articles, editorials, letters to the editor, and case reports were also excluded.
Data extraction and synthesis
Data from each of the studies reviewed were collected using excel spread sheet. The data collected include, publication year, name of the author, location of the study, sample size, HR-HPV genotypes reported in HPV/HIV co-infection and HPV mono-infection, method of genotyping, CD4 counts reported and method used, finally cervical cancer biomarker and method used.
Quality assessment
The quality of the article collected for this review was assessed blindly using Rayyan platform by two independent reviewers with invitation of a third reviewer for conflict resolution to reduced personal bias. We first conducted the title and abstract screening, excluding 272 articles that did not meet the inclusion criteria. We detected 39 conflicts among the 98 articles that met the inclusion criteria. The third reviewer resolved these conflicts by screening 109 articles. Two reviewers again downloaded and uploaded 109 full-text PDF articles to Rayyan for comprehensive full-text screening. Following the full-text screening, two reviewers included 78 articles, excluded 10, and detected 20 conflicts. We resolved these conflicts by inviting the third reviewer, which ultimately resulted in 84 articles meeting the eligible criteria and quality assessment for this review.
Results
Search results
The research identified a total of 664 articles across three databases: 328 articles from the Web of Science, 230 articles from Scopus, and 106 articles from PubMed. We then uploaded and merged all the articles on the Rayan platform. We detected 336 duplicate articles during the initial merge. We resolved 181 of these duplicate articles, deleted 255, and left 409 for title and abstract screening on Rayan.
Study characteristic
This systematic review includes publications published from 2008 to 2024. The sample sizes of the included studies ranged from 50 to 5,392 people, with majority of them adopting cross-sectional study design. This systematic review included 84 research articles and 57 were studies conducted in Africa distributed as follows: Kenya (18 articles), South Africa (11 articles), Uganda (8 articles), Rwanda (8 articles), Tanzania (5 articles), Botswana (5 studies), Nigeria (3 studies), Zimbabwe (2 studies), Ghana (2 studies), and Congo, Senegal, Gambia, Morocco, Côte d'Ivoire, Burundi, and Zambia with one study each. In Asia, there were eight (8) studies; India (4 articles), China (2 articles), Korea (1 article), and Pakistan (1 article). Seven (7) articles were identified from Europe including three from Italy, one from Romania, and three from Denmark. Seven articles were also conducted in North America, including four in Brazil, two in Colombia, and one in Guyana. The United States contributed five studies. The studies were carried out in hospitals, clinics, and research laboratories, with individuals coming from both urban and rural locations.
Discussion
This systematic review highlights a significant burden of high-risk HPV genotypes among women living with HIV. Women co-infected with HPV/HIV exhibited a notably higher prevalence of HR-HPV genotypes and multiple HR-HPV infections compared to those with HPV mono-infections shown in Table 1 and Fig. 2. HIV-induce immunosuppressive effects, which reduce the immune system's ability to eliminate HPV infections allowing it to remain in the body for long periods of time as a result of decreased immune surveillance. The weakened immunological milieu enhances HR-HPV integration into the host genome, altering normal cellular function and increasing the risk of neoplastic transformation. The interaction of HIV-induced immunosuppression and HPV persistence highlights the increased risk of cervical cancer in HIV-positive women.
Table 1.
Prevalence and distribution of HR-HPV genotypes among women living with HPV/HIV co-infection and HPV mono-infections reported across various studies reviewed
| HR-HPV genotypes Order of HR-HPV prevalence reported | Percentage % | Location | Year | Sample size | Study | ||
|---|---|---|---|---|---|---|---|
| HPV/HIV co-infection | HPV mono-infection | HPV/HIV | HPV | ||||
| 16,81,58,72 33,62,73 | 18,16,31,33,35,45,52,58,66 | 33.9 | 13.9 | Italy | 2008 | 227 | [71] |
| 16,18,31,51,52,58,68 | 16,52,18,31,51,58 | 45 | 32.2 | Romania | 2015 | 1032 | [73] |
| 16,18,45,33,58,68 | 16,18 | 36.9 | 4.4 | Pakistan | 2023 | 200 | [5] |
| 35,45,51,52,58,66,18 | 45,35,33,51,18 | 63 | 23 | Tanzania | 2021 | 2134 | [32] |
| 16,18,31,58,45 | 16,45,33,18 | 30 | 20 | Columbia | 2018 | 3399 | [9] |
| 16,18,35,51,58,33,45,52,59 | 16,18,39,45, | 52 | 41 | Tanzania | 2021 | 2134 | [34] |
| 16,18,45,35,39,51,31,52,56,58,59,68 | 16,18,45,31,33,35,52,56,58,68 | 66.7 | 69.1 | South Africa, Kenya | 2015 | 274 | [17] |
| 16,18,31,33,35,39,45,52,56,58,59 | 16,18,31,35,58 | 65 | 49 | South Africa | 2021 | 193 | [66] |
| 16,66,53,58,45,52,61 | 16,66,53 | 23.0 | 4.1 | Kenya | 2021 | 317 | [45] |
| 16,18,56,45,33,58 | 16,18,33,35,56,45 | 87 | 79 | Zimbabwe | 2018 | 107 | [37] |
| 16,18,31,33,35,39,45,51,52, 53,56,58,66,70 | 16,18,31,33,35,39,45,51,52,53,56,58,59,66,68,70 | 30 | 4.9 | Korea | 2014 | 1938 | [54] |
| 16,18,33,52,51,56,66 | 66,18,16,67,45,33,39 | 13.4 | 2.7 | Burundi | 2019 | 3500 | [44] |
The percentage of HR-HPV detection in HPV/HIV co-infections was found to be higher compared to HPV mono-infections in most studies. Some regions report unique HR-HPV profiles. For example, Korea includes genotypes such as HPV-53 and HPV-70, while Africa and other regions consistently shows high prevalence of genotypes such as HPV-16, HPV-18, and HPV-45 followed by 31,33,35 and 58
Fig. 2.
Percentage distribution of HR-HPV genotypes among HIV positive individuals reported across various studies globally. The HR-HPV genotypes reported across various studies include HPV16, 18, 31, 33, 35, 39, 45, 51, 52, 53, 54, 56, 58, 59, 66, 68, 70, 73, and 82. The most common HR-HPV genotypes reported among HIV-positive individuals included HPV 16, 18, 45, 35, and 58, accounting for 11%, 10%, 9%, 8%, 8%, respectively as presented while 31and 33 accounted for 7% each
These findings align with another previews study conducted by Bogale et al. [7] a systematic review and meta-analysis. They found several HR-HPV genotypes, such as HPV16, 18, 26, 31, 33, 35, 39, 45, 51, 52, 53, 54, 56, 58, 59, 66, 68, 69, 70, 73, and 82. Among these genotypes reported, HPV16 (20%) was the most prevalent, followed by HPV45 (15%) and 52 at 13%. Additionally, our findings bear some slight similarities to another systematic review by [68] in sub-Saharan Africa, which also reported HPV16 (18%), 35 (10.12%), 52 (9.7%), and 45 (6.82%). The similarities in these findings suggest a consistent pattern of specific HR-HPV genotypes being the most prevalent in HIV-positive individuals on a global scale. Particularly, HPV16, 35, 45, and 52 stand out as the most commonly reported genotypes in both studies, highlighting their impact on HPV/HIV co-infection.
The emergence of HPV genotypes 31, 33, 35, and 58 in our study indicate their significant contribution to cervical cancer progression on a global scale. Although HPV16 and HPV18 have traditionally been regarded as the most oncogenic genotypes, recent studies have highlighted the increasing clinical relevance of other high-risk HPV genotypes, such as HPV31, 33, 35, and 58. These genotypes belong to the Alpha-9 species group, which is characterized by high prevalence and significant oncogenic potential [2]. Within this group, HPV16, 31, 33, 35, and 58 are particularly associated with cervical cancer, especially in individuals co-infected with HIV [62]. The findings from our current study, which report the presence of these genotypes, further emphasize their considerable oncogenic potential. Their high prevalence and strong association with cervical cancer suggest that these genotypes are playing an increasingly important role in disease progression, particularly in regions with a high burden of HIV, such as sub-Saharan Africa [2]. Notably, most of the studies reviewed in this context were conducted in African populations, as reflected in Table 2, highlighting the regional predominance and clinical significance of these genotypes.
Table 2.
Summary of the study findings
| S/N | Author | Year | Simple Size | Study design | Median age | Study setting | Duration | ART | Mean CD4 counts cells/ μL | location |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Dylla et al | 2017 | 100 | Cross sectional study | 40 | Two clinics | 2012–2014 | NA | NA | South Africa |
| 2 | J.D. Siqueira et al | 2016 | 130 | Retrospective study | 28 | Hospitals and research laboratory | 2009–2011 | NA | 326 cells/ μL | Brazil |
| 3 | Ndiaye et al | 2012 | 204 | Multicentric study | 51.9 | Teaching hospitals, research laboratory | 2006–2010 | NA | NA | sub- saharan Africa |
| 4 | MADEDDU et al | 2014 | 57 | Cross sectional study | 40 | Hospital | 2008–2009 | NA | 571 ± 227 cells/ μL | Italy |
| 5 | D.D Yar et al | 2016 | 10,603 | Case control | 40.1 | Regional hospital | 2013–2014 | Yes | NA | Ghana |
| 6 | Lina et al | 2008 | 205 | Cross sectional study | 32.2 | Hospital | 2001–2004 | Yes | 200 ± 500 cells/ μL | Italy |
| 7 | Howard D,et al | 2013 | 13,690 | Cross sectional study | Teaching hospitals | 1996–2010 | yes | 350 cells/ μL | USA | |
| 8 | Camargo et at | 2018 | 1399 | Cross sectional observational study | 37.5 | Hospital | 2007–2013 | NA | 100 cells/ μL | Colombia |
| 9 | Keller et al | 2015 | 2091 | Prospective study | 35 | Hospital | 1994–2002 | NA | 350 cells/ μL | Colombia |
| 10 | Amos et at | 2012 | 170 | Case control study | 40.5 | Hospital | 2005–2006 | Yes | NA | Tanzania |
| 11 | Mckenzie et al | 2014 | 510 | Retrospective study | 40 | Hospital | 2000–2008 | NA | 193 cells/ μL | USA |
| 12 | Aaron et al | 2021 | 116 | Cross sectional study | NA | Research laboratory | 2010–2013 | NA | NA | Kenya |
| 13 | Lynette Denny et al | 2019 | 659 | Cross sectional study | 55 | Hospital and research laboratory | 2007–2010 | NA | NA | sub- saharan Africa |
| 14 | Margot Boudes et al | 2021 | 90 | observational, monocentric and historical study | 44.2 | Laboratory setting | 2014–2022 | NA | 350 cells/ μL | France |
| 15 | L. Stewart et al | 2016 | 4068 | Cohort study | 39.5 | Hospital | 1994–2011 | NA | NA | New York |
| 16 | Hugo De et al | 2011 | 274 | Case study | 40.8 | Teaching hospitals | 2007–2009 | Yes | 334 cells/ μL | Kenya, south Africa |
| 17 | James Mburu et al | 2023 | 647 | Cross sectional study | 42.8 | Hospital | NA | Yes | 200 cells/ μL | Kenya |
| 18 | Ramona et at | 2015 | 1,032 | Cross sectional study | 36.5 | Hospital | 2013–2014 | Yes | 369 cells/ μL | Romania |
| 19 | McGrath et al | 2017 | 500 | Cross sectional study | 38.0 | Hospital | 2019 | Yes | 371 cells/ μL | Kenya |
| 20 | de Vuyst, et al | 2015 | 250 | Cross sectional and perspective | 37 | Hospital | 2015 | NA | NA | Kenya |
| 21 | Nyabigambo et al | 2022 | 750 | Cross sectional study | Hospital | NA | Yes | < 500 cells/ μL | Uganda | |
| 22 | Chung et al | 2013 | 500 | Cross sectional study | 40 | Hospital | 2009 | yes | 350 cells/ μL | Kenya |
| 23 | Nantale et al | 2024 | 300 | Cross sectional study | 33 | ART clinic | 2021–2022 | YES | NA | Uganda |
| 24 | Paul Thistle et al | 2020 | 400 | Cross sectional study | 42 | Hospital | NA | NA | NA | Zimbabwe |
| 25 | Hafsa Aziz et al | 2023 | 135 | Cross sectional study | 46 | Hospital | 2017–2019 | NA | NA | Pakistan |
| 26 | Rowhani-Rahbar et al | 2008 | 5392 | Cross sectional study | 31.4 | Infectious disease clinic | 1993–19,998 | NA | < 500 cells/ μL | Senegal |
| 27 | SR Wall et al | 2005 | 1348 | NA | NA | Hospital | 1999 | NA | NA | Gambia |
| 28 | Gad Murenzi et al | 2021 | 500 | Case control | NA | Health center | 1996–2002 | NA | NA | Rwanda |
| c | Akakpo et al | 2023 | 330 | Cross sectional study | 47.2 | Teaching hospital | 2020–2021 | Yes | NA | Ghana |
| 30 | Wanja Karani et al | 2021 | 1854 | Case control study | 39 | Teaching hospital | NA | NA | NA | Kenya |
| 31 | Tsimba Lemba et al | 2023 | 284 | Population based cross sectional study | 37.8 | Hospital | 2021–2022 | NA | NA | Congo |
| 32 | Wenyan Huo et al | 2020 | 226 | Cross sectional study | 43.7 | Teaching hospital | 2016–2017 | NA | NA | China |
| 33 | Ruby Mcharo et al | 2021 | 1,134 | Perspective study | 40 | Referral Hospital | 2013–2020 | Yes | 200 cells/ μL | Tanzania |
| 34 | Lall et al | 2021 | 100 | Cross sectional study | 39.4 | ART clinic | 4 years | yes | 363 cells/ μL | India, |
| 35 | Nakigozi et al | 2024 | 5856 | Descriptive cross-sectional study | 40 | Health centers | NA | Yes | NA | Uganda |
| 36 | Tawe et al | 2020 | 126 | Cross sectional study | 45 | Hospital/ research laboratory | 2013–2016 | Yes | 487 cells/ μL | Botswana |
| 37 | Tawe et al | 2022 | 98 | Cross sectional study | 50 | Hospital | NA | NA | NA | Botswana &Kenya |
| 38 | Murenzi et al | 2022 | 5000 | Cross sectional study | NA | Military hospital | 2017–2018 | NA | NA | Rwanda |
| 39 | Ongeziwe et al | 2020 | 193 | Cross sectional study | 40 | Referral hospital | 2017–2019 | NA | NA | South Africa |
| 40 | Leitao et al | 2008 | 545 | Case control study | 40 | Hospital | 1995–2006 | Yes | 208 cells/ μL | USA |
| 41 | Omire et al | 2020 | 217 | Cross sectional study | 36 | Referral hospital | NA | NA | NA | Kenya |
| 42 | Orang’o et al | 2020 | 800 | Cross sectional study | 30 | Hospital | 2016–2017 | NA | NA | Kenya |
| 43 | Maina et al | 2023 | 200 | Group randomized clinical trials | 37 | Hospital and Research laboratory | 2010–2016 | Yes | 374 cells/ μL | Kenya |
| 44 | Uwamungu et al | 2023 | 50 | Cross sectional study | 53.1 | Teaching hospital | NA | NA | 200 cells/ μL | Rwanda |
| 45 | Mbuya et al | 2021 | 373 | Longitudinal case control study | 41 | Referral hospital | NA | NA | NA | Tanzania |
| 46 | Njue et al | 2021 | 317 | Case control study | 34 | Hospital | 2019 | NA | NA | Kenya |
| 47 | Houlihan et al | 2016 | 503 | Cohort study | 17.8 | Research laboratory | 2010 | NA | NA | Tanzania |
| 48 | Mitchell et al | 2017 | 87 | Cross sectional study | 38.9 | HIV clinic | 2013 | Yes | 350 cells/ μL | Uganda |
| 49 | Wentzensen et al | 2014 | 363 | Cross sectional study | 53 | Hospital | 2009–2010 | Yes | 350 cells/ μL | USA |
| 50 | Ouladlahsen et al | 2018 | 25 | Longitudinal cohort study | 39 | Research laboratory | 2013–2016 | NA | 523 cells/ μL | Morocco |
| 51 | Abel et al | 2019 | 439 | Cross sectional study | 46 | 4 Hospitals | 2011–2014 | Yes | 185 cells/ μL | Guiana |
| 52 | J. N. MBATHA ET AL | 2017 | 1223 | Cross sectional study | 17.5 | Govt. High school | 2010–2013 | NA | NA | South Africa |
| 53 | Ermel et al | 2016 | 51 | Longitudinal study | 39 | Cervical cancer Clinic | 2015 | Yes | 350 cells/ μL | Kenya |
| 54 | MUDINI et al | 2018 | 107 | Cross sectional study | 44 | Hospital | 2014–2015 | NA | NA | ZIMBABWE |
| 55 | A Jaquet et al | 2012 | 1940 | Cross sectional study | 36 | Clinic | 2010 | yes | 471 cells/ μL | Coˆ te d’Ivoire |
| 56 | McDonald et al | 2012 | 1,050 | Cross sectional study | 37 | Hospital | 1998–1999 | NA | NA | South Africa |
| 57 | McDonald et al | 2014 | 9,421 | Cross sectional study | NA | Clinical sites | 2000–2002 | NA | NA | South Africa |
| 58 | Badial et al | 2018 | 80 | Cross sectional study | 39.3 | Hospital | 2010–2011 | Yes | 50 cells/ μL | Brazil |
| 59 | Park EK, et al | 2014 | 1,938 | Retrospective study | 47 | Hospital | 2009–2012 | NA | 307 ± 351 cells/ μL | Korea |
| 60 | Thorsteinsson et al | 2019 | 96 | Prospective observational cohort study | 42.5 | Hospital | 2011–2014 | yes | 350 cells/ μL | Denmark |
| 61 | Menon et al | 2017 | 616 | Observational cross-sectional study | 28 | Hospital | 2009–2015 | NA | NA | Kenya |
| 62 | Ndizeye et al | 2019 | 3500 | Cross sectional study | 39.9 | Health center | 2013–2016 | NA | NA | Burundi |
| 63 | Mujuni et al | 2016 | 255 | Cross sectional study | 39 | Hospital | 2014 | yes | 200 cells/ μL | Tanzania |
| 64 | Ezechi et al | 2014 | 536 | Cross sectional study | 37 | Cervical cancer clinic | NA | yes | 200 cells/ μL | Nigerian |
| 65 | Jaya et al | 2016 | 216 | Cross sectional study | 35 | Hospital | 2010 | NA | 350 cells/ μL | India |
| 66 | Wu TJ, et al | 2016 | 146 | Cross sectional study | 35.4 | AIDS center | 2010–2012 | NA | 506 cells/ μL | Kenya |
| 67 | Meiring et al | 2012 | 109 | Cross sectional study | 31 | ARV clinic | NA | Yes | NA | South Africa |
| 68 | Ermel et al | 2019 | 285 | Longitudinal study | 37 | Clinic | 2015–2016 | NA | NA | Kenya |
| 69 | Murenzi G, et al | 2018 | 5000 | Retrospective study | NA | Hospital | 1996–2002 | NA | NA | Rwanda |
| 70 | Odida et al | 2011 | 316 | Case control study | 40 | Reginal Hospital | 2004–2006 | NA | 100 cells/ μL | Uganda |
| 71 | A.E. Luque et a | 2010 | 225 | Cross sectional study | 38.3 | AIDS clinical trial clinic | NA | NA | 346 cells/ μL | Uganda |
| 72 | Ramogola-Masire et al | 2011 | 100 | Cross sectional study | 36 | Health clinic | 2009–2010 | NA | 238 ± 458 cells/ μL | Botswana |
| 73 | Sarkar et al | 2011 | 1106 | Hospital based cross sectional study | 30 | Hospital | NA | yes | NA | India |
| 74 | Sahasrabuddhe et al | 2007 | 150 | Cross sectional study | 36.2 | Teaching hospital | NA | NA | 208 cells/ μL | Zambia |
| 75 | Anastos et al | 2010 | 710 | Observational cohort study | 40 | Hospital | 2005 | NA | 100 cells/ μL | Rwanda |
| 76 | Dartell et al | 2012 | 3603 | Cross sectional study | 38 | Cancer institution | 2008–2009 | NA | NA | Tanzania |
| 77 | Namujju et al | 2011 | 1943 | Cohort study | 23 | Hospital | 2011 | NA | NA | Uganda |
| 78 | Blossom et al | 2007 | 135 | Cross sectional study | 25 | Referral hospital | 2002 6 weeks | NA | NA | Uganda |
| 79 | Bogale et al | 2022 | 578 | Comparative cross-sectional study | 38.9 | HIV clinic | 2021 | NA | NA | Ethiopia |
| 80 | Chakravarty et al | 2016 | 216 | Cross sectional study | 35 | Hospital | 2010–2012 | Yes | 350 cells/ μL | India |
| 81 | Chambuso et al | 2020 | 181 | Cross sectional study | 35 | Hospital | 2016–2017 | NA | NA | Ghana |
| 82 | De lemos et al | 2012 | 237 | Cross sectional study | 40 | Hospital | 2005–2006 | NA | 200 cells/ μL | Brazil |
| 83 | Di salvo et al | 2023 | 10,241 | implementation study | NA | Referral hospital | NA | NA | NA | Tanzania |
| 84 | Konopnicki et al | 2013 | 825 | Perspective observational study | 38 | Hospital | 2002- 2011 | Yes | 426 cells/ μL | Belgium |
The studies included in this review span across multiple continents, with significant representation from Africa, North America, South America, Asia, and Europe. All the studies utilized Virginia Swabs except a study conducted in Uganda by Nyabigambo et al. [46] who utilized urinary sample
Additionally, several factors, such as the number of included studies, the analysis method, study setting variations, and differences in the timeframe of these studies, likely contribute to the observed variation in percentage and order of prevalence. Additionally, the various diagnostic instruments, combination of different technology and genotyping methodologies used in different research projects may influence the differences in reported prevalence. These methods' sensitivity and specificity can influence the detection rates of different HPV genotypes. PCR based techniques was the most commonly used HPV genotyping method (38.8%), followed by Roche Linear Array (13.8%) and Gene Xpert (11.3%). These methods rely on PCR as the foundational step for amplification, either for direct analysis or to prepare DNA for further processes like hybridization or sequencing as summarized in Table 3.
Table 3.
Percentage molecular genotyping methods reported across various studies reviewed
| Genotyping Method | Principle of operation | Studies | Percentage |
|---|---|---|---|
| Gene Xpert | Used Real-Time PCR technology to detect and quantify target nucleic acid sequence | [26, 32, 43] | 11.3 |
| Ampfire | Employ isothermal amplification for rapid and sensitive detection of target nucleic acid sequence without thermal cycling | [36, 40] | 5.0 |
| COBAS | Used Real-Time PCR technology for quantitative detection and differentiation of HPV genotypes | [64] | 1.3 |
| Hologic | Used target captured and transcription mediation amplification for detecting and genotyping HPV | [17, 49] | 6.3 |
| Hybrid assay 2 | Combine hybrid captured and signal amplification to detect and quantify HPV genotypes | [14] | 5.0 |
| Hybrispot machine (PCR) | Employ PCR technology to detect and quantify HPV genotypes | [66] | 1.3 |
| Line probe assay | Used reverse hybridization to detect and quantify HPV genotypes often with colorimeter or chemiluminescent | [20, 73] | 1.3 |
| PapilloCheck | Used DNA chip technology to detect and differentiate HPV multiple genotypes simultaneously | [8] | 1.3 |
| PCR | Amplified HPV DNA using thermal cycler, consisting of denaturation, annealing and extension steps | [14, 44] | 38.8 |
| LiPA Extra assay | The test uses reverse hybridization, biotin-labeled PCR-amplified HPV DNA binds to specific oligonucleotide probes immobilized on a strip, and a colorimetric reaction identifies the genotypes based on probe binding | [14] | 1.3 |
| PCR & sequencing | Combines PCR amplification with sequencing to identify the exact nucleotide sequence of the generated DNA | [12] | 2.5 |
| PCR-microarray system | Combining PCR amplification with microarray technology allows for high-throughput detection and genotyping of multiple DNA sequences at once | [54] | 1.3 |
| Real-Time hr-HPV assay | Real-time PCR is used to detect high-risk HPV genotypes, utilizing fluorescent probes that allow for real-time amplification monitoring | [67] | 1.3 |
| Roche Linear Array | To detect multiple HPV genotypes, PCR is used first, followed by reverse hybridization on a linear array | [22, 32, 59] | 13.8 |
| RT-PCR | Reverse transcription polymerase chain reaction (PCR) is used to convert RNA into DNA, which is subsequently amplified to detect and quantify RNA targets | [35, 38] | 8.8 |
| Sanger sequencing MTd | To sequence DNA, chain-terminating nucleotides are used, which allows the exact nucleotide sequence to be determined by measuring the length of terminated fragments | [61] | 1.3 |
The table presented molecular genotyping method used utilized in detecting HR-HPV genotypes across various studies reviewed. PCR-based methods dominate (e.g., standard PCR: 38.8%, Roche Linear Array: 13.8%), while isothermal amplification (Gene Xpert: 11.3%, Ampfire: 5.0%) and hybridization techniques (LiPA Extra assay, Line Probe) are less common. Advanced sequencing and microarray systems are used minimally, reflecting technological variation based on study
These variations could also be driven by regional differences in HPV and HIV co-infection epidemiology. For example, the burden of HPV-related cancer may differ between regions due to differences in sexual behavior, cultural practice, and access to preventive measures like the HPV vaccine and cervical cancer screening programs [38]. Percentage distribution of HR-HPV genotypes among HIV positive individuals reported across various studies globally are shown in Fig. 2. Variations in the demographic features of study populations, such as age, lifestyle, and immunological status, may also contribute to the discrepancy [68]. Different levels of immunosuppression among HIV-positive individuals in different locations could impact the prevalence and persistence of some specific HR-HPV genotypes [38]. For example, majority of the studies included in this review reported low CD4 count levels within the 200–500 cells/µL ranges [9, 24, 30, 31, 31] and [11] reported that CD4 counts between 200 and 400 ml/L and 300 and 400 ml/L accounted for 29.1% and 30.0%, respectively as summarized in Table 4.
Table 4.
Showing CD4 count reported across various studies
| CD4 count cells/μL | Percentage | Frequency | References |
|---|---|---|---|
| 200–300 | 29.1 | 32 | [9, 9, 11, 24, 30, 31, 31] |
| 300–400 | 30.0 | 33 | [24, 72] |
| 400–500 | 23.6 | 26 | [13, 31] |
| 500–600 | 7.3 | 8 | [4, 69, 73] |
| 600–700 | 1.8 | 2 | [1, 29, 74] |
| 700–800 | 0.9 | 1 | [29], |
| 800–900 | 1.8 | 2 | [18] |
| 900–1000 | 0.9 | 1 | [15] |
| 1000–2000 | 3.6 | 4 | [9, 21] |
| 2000–4000 | 0.9 | 1 | [9] |
Though these studies did not report immunosuppression, however, it is generally known that CD4 counts below 400 ml/μL have been categorized as immunosuppressed, ranging from severe (below 300 ml/μL CD4 counts) to moderate (300–499 ml/μL CD4 counts). From our review, we observed that 29.1% fall within 200 -300 ml/μL, 30% fall within 300 s-400 ml/μL, 23.6% fall within 400–500 ml/μL, and 17.2% were above 500 ml/μL which is regarded as normal as shown in Table 4. The percentage values in Table 4 represent the number of times authors reported the CD4s within the range
The percentages of different methods used to measure CD4 counts in the reviewed studies reflects their availability, accessibility, and operational advantages as summarized in Table 5. The FACS Count Analyzer, which was reported in 33.3% of the studies reported was the most commonly utilized method due to its dependability and adaptability for resource-constrained settings, particularly in high HIV incidence areas [20]. The CD4 Counter, which was been reported in 20.0% of studies, is popular since it is inexpensive, portable, and simple, making it excellent for rural or underserved areas. Less popular technologies, including as Cell Analyzers, FACSCount, and Flow Cytometry (all 4.4%), are typically reserved for advanced research or clinical settings. While flow cytometry provides high sensitivity and multi-parameter analysis, its cost and technical requirements limit its utilization, and other advanced systems are equally constrained by operational expenses and maintenance requirements [11].
Table 5.
CD4 counting Methods Reported across various studies
| CD4. Method | Studies reported | Principle of operation | References |
|---|---|---|---|
| CD4 counter | 9 | CD4 cells are counted using a simplified flow cytometry approach, which frequently includes fluorescence-labeled antibodies specific to CD4 + T cells | [4, 48] |
| Cell Analyzer | 7 | Employs automated technologies that use laser-based flow cytometry to evaluate and count numerous cell types, including CD4 + T cells, using surface markers | [19, 38] |
| FACS count analyzer | 15 | Uses fluorescence-activated cell sorting (FACS) to count and evaluate CD4 + T lymphocytes by marking them with specific fluorescent antibodies and detecting them using flow cytometry | [11, 12, 49] |
| FACSCount | 2 | A flow cytometer that is specifically intended to count CD4 + T lymphocytes by identifying and quantifying them with fluorochrome-labeled antibodies | [20, 24] |
| Flow cytometer | 2 | Laser-based technology is used to evaluate the physical and chemical properties of cells, detecting and counting CD4 + T cells using specific fluorescence markers | [3, 12] |
The FACS Count Analyzer was the most frequently method reported in 33.3% of the studies. The CD4 Counter is also quite commonly used method reported in 20.0% of the studies. Other methods such as Cell Analyzer, FACSCount, and Flow Cytometer are used less frequently, with FACSCount and Flow Cytometer each reported in 4.4%
This finding suggests significant immunosuppression, which is prevalent among people with advanced HIV infection. It weakens the body's ability to eliminate HPV infections, leading to persistent infections that increase the risk of developing cervical cancer. Interestingly, HPV-16 was prevalent in all the studies reporting HIV-related immunosuppression. Some of the studies reported immunosuppression even when 100% of the study participants were on antiretroviral therapy (ART) [17, 42, 54, 68]. This highlights the importance of monitoring and managing HPV infection in HIV-positive individuals, particularly those undergoing ART, and screening for cervical cancer regularly.
The types of samples utilized in laboratory analysis have a substantial impact on the identification and prevalence rates of various high-risk HPV (HR-HPV) genotypes. For instance, Nyabigambo et al. [46] conducted one of the reviewed studies in Uganda and reported varying prevalence rates for HPV genotypes among HIV-positive patients. In this study, HPV58 was the most prevalent (87.1%), followed by HPV16 (58.6%), 33 and 59 at 48.6%, 31 (41.4%), and 18 (31.7%) among HIV-positive women. Notably, this study used self-collected urine samples rather than vaginal swabs, which may affect the identification and prevalence rates of specific HPV genotypes. Using other types of samples, such as urine, may produce different results compared to established procedures like vaginal swabs, thus changing the observed distribution of HR-HPV.
Various studies [22, 42, 54] have reported an association between HPV infection and HIV infection, the number of sexual partners, early sexual debut, and smoking. Smoking suppresses the immune system, increasing vulnerability to HPV infections [21]. The cervix's immaturity during adolescence makes early sexual debut a risk factor, increasing susceptibility to HR-HPV infection. The transformation zone, where HPV-related cancer normally develops, is more exposed and susceptible to infection [39]. Additionally, having sex with multiple partners increases the likelihood of exposure to both HPV and HIV [56]. The reported risk factors vary from one region to another, which is the primary reason for the global variation in the distribution of HR-HPV genotypes.
We looked at studies that reported the impact of HPV/HIV co-infection on cervical cancer biomarkers. The cervical cancer biomarkers include were, P16INK4a, Ki-67, and p16INK4a/Ki-67 combined as reported in Table 6. P16INK4a, a cyclin-dependent kinase inhibitor that acts as a tumor suppressor by inhibiting CDK4 and CDK6, preventing phosphorylation of the retinoblastoma (Rb) protein, and causing cell cycle arrest in the G1 phase [70]. As a compensatory mechanism, the cell will upregulate p16INK4a overexpression, which is detectable in HPV-infected cells. p16INK4a was utilized in 50% of the studies of the studies reviewed reporting cervical cancer biomarkers [31, 41] Ki-67 is a cellular proliferation marker whose presence signals active cell division, a hallmark of malignant progression was utilized in 12% of the studies reporting cervical cancer biomarkers [31]. while the combination of p16INK4a and Ki-67 was utilized in 38% of the studies that reported these biomarkers [49, 63].
Table 6.
Percentage cervical cancer biomarkers reported across various studies reviewed
| Method | Studies Reported | Percentage % | References |
|---|---|---|---|
| P16INK4a | 4 | 50% | [23] |
| Ki-67 | 1 | 12% | [31], |
| p16 INK4a + / Ki-67 + | 3 | 38% | [49, 63], |
Key: P16INK4a = P16, the molecular weight of protein (16 kilodaltons), INK (inhibitor kinase), and a (CDKN2A). Ki (Kiel) and 67 (67 number of antibodies in the protein)
P16INK4a was the most commonly utilized biomarker reported in 50% of the studies reviewed. The Ki-67 biomarker was reported in 12% of the studies, while the combination of P16INK4a + /Ki-67 + was reported in 38% of the studies reviewed
However, these studies did not report the impact of HPV/HIV co-infection on cervical cancer biomarker, This limitation may stem from the relatively small number of studies meeting inclusion criteria and limited research conducted on these biomarkers in the context of co-infection [31, 41] One of the study reviewed utilized p16INK4a to detect CINI, CIN II and CIN III in the context of HPV infection alone and further concluded that p16INK4a can be used as a biomarker for early screening of cervical cancer [23]. Another study utilized the combination of p16INK4a and Ki-67 by immunohistochemistry to detect cervical cancer in HPV/HIV co-infection but could not established any significant impact of HIV co-infection on cervical cancer biomarkers [63]. These biomarkers were utilized using immunohistochemistry accounted for 87.3% of the studies followed by ELISA at 12.7% of the studies that reported cervical cancer biomarkers as presented in Table 7. It is worth to note that p16INK4a detection as cervical cancer biomarker did not do well using ELISA method [51]. These biomarkers can be expressed more in the present of HIV infection, suggesting chronic HPV infection notably in people with weak immune systems leading to more oncogenic activity and cell proliferation. This highlights the importance of targeted screening and early detection measures in this high-risk population for effectively managing and treating HPV-related cancers. When these markers are present together, they make it easier to detect both cervical intraepithelial neoplasia (CIN) and cervical cancer as suggested by [23].
Table 7.
Cervical cancer biomarkers determination methods reported
| Method | Percentage | Principle of Operation | References |
|---|---|---|---|
| Immunohistochemistry | 87 .3% | Detects and visualizes specific proteins in tissue slices via antibodies coupled with enzymes or fluorophores. The presence of Ki-67 is indicative of cell growth | [23, 31, [31, 49] |
| ELISA | 12. 7% | The p16 protein, a tumor suppressor, is identified in tissue samples using p16-specific antibodies. High p16 levels are linked to HPV-related carcinogenesis and cervical cancer | [51] |
The most common method used by to assess these biomarkers was Immunohistochemistry accounted for 87.3% of the studies reported while ELISA accounted for 12.7% of the studies reviewed
Key: ELISA Enzymes-linked immunosorbent assay
The majority of the studies included in this review were from sub-Saharan Africa, where the burden of HPV and HIV is high. Sub-Saharan Africa has higher rates of HPV-related malignancies, such as cervical cancer, owing to poor access to preventive interventions such as the HPV vaccine and regular cervical cancer screening programs [75]. Furthermore, the high prevalence of HIV in this region increases the incidence and persistence of HR-HPV infections due to the immunocompromised status of HIV-positive individuals [20]. However, other regions with high HIV incidence, such as parts of Asia, Eastern Europe, and Latin America, also face comparable issues [60]. In these areas, low healthcare infrastructure, insufficient access to preventative treatments, and high levels of immunosuppression among HIV-positive individuals all contribute to an increased burden of HPV and the risk of cervical cancer [73]. A study in Brazil [6] found that HIV-immunosuppressed patients with HPV16, 56, and 70 were found to have CIN I, CIN II, and CIN III. This finding underscores the global reach of the problem, given that other regions with high HIV prevalence have reported similar patterns of HPV-related cervical lesions. The fact that HPV types 16, 56, and 70 were found in the cohort shows a range of high-risk HPV genotypes that can cause cervical lesions, which is similar to the problem of HPV and HIV co-infection in the rest of the world. Another study in Denmark [69] reported HPV 58, 52, 51, and 35 as the most common HPV genotypes.
The findings indicate that in addition to the most prevalent high-risk HPV (HR-HPV) genotypes, such as HPV16, 18, and 45, other HR-HPV genotypes are emerging, particularly among HIV-positive individuals. These findings highlight the dynamic nature of HPV genotype distribution in the context of HPV/HIV co-infection. HIV-positive individuals are particularly susceptible to a broader range of HR-HPV infections due to their compromised immune systems. HIV-induced immunosuppression reduces the host’s ability to effectively clear HPV infections, creating an environment conducive to persistent and multiple HR-HPV infections. This leads to the coexistence and persistence of numerous HR-HPV genotypes, which increases the chance of developing cervical intraepithelial neoplasia (CIN) and cervical cancer. Emerging HR-HPV genotypes, including HPV58, 70, and 56, are of special concern due to their high carcinogenic potential. These genotypes have been demonstrated to have an important role in the evolution of cervical lesions, complicating disease management and preventative efforts. The interplay between HIV-induced immunosuppression and HR-HPV infections creates a synergistic effect that accelerates the oncogenic process. Persistent infections with multiple HR-HPV genotypes in HIV-positive individuals not only increase the risk of higher-grade CIN but also reduce the efficacy of natural immune responses to control HPV proliferation. This situation underscores the importance of tailored public health interventions, including regular screening for a broader range of HR-HPV genotypes, timely treatment of cervical lesions, and enhanced HPV vaccination coverage targeting HIV-positive populations.
Conclusion
This systematic review reveals high prevalence of multiple high-risk HPV genotypes among HIV-positive individuals, highlighting the impact of HPV/HIV co-infection on cervical cancer development. Low CD4 counts ranging from severe to moderate immunosuppression were found to associated with increased persistence and progression of HR-HPV infections, emphasizing the need for efficient HPV/HIV care to reduce immunosuppression. While p16INK4a and Ki-67 were utilized as cervical cancer biomarkers, there was no direct impact of HPV/HIV co-infection reported on these biomarkers required to be studied more especially in people living with HIV.
Study limitations
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o
Selection Bias: The review may have excluded unpublished studies and gray literatures potentially misrepresenting some certain populations.
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o
Lack of quantitative meta-analysis: without meta-analysis, the study relies on descriptive synthesis limiting precision and the ability to assess heterogeneity statistically.
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o
Heterogeneity Across Studies: Variations in study design, population characteristics, and diagnostic methods limited comparability and generalizability.
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o
Limited Data on Biomarkers: Few studies assessed cervical cancer biomarkers (e.g., Ki-67, p16, p53), with inconsistent methods across studies.
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o
Reporting Bias: Published studies may favor significant findings, possibly skewing interpretations.
Acknowledgements
We express our deep gratitude to Kampala International University, western campus and the Faculty of Biomedical Sciences for providing the platform and support that enabled the successful completion of this review.
Authors confirmation
We confirm that the manuscript has been consent and approved by all authors and that the content has not been published or submitted for publication elsewhere.
Abbreviations
- ART
Antiretroviral Therapy
- CD4
Cluster of Differentiation
- CIN
Cervical Intraepithelial Neoplasia
- COX-2
Cyclooxygenase-2
- HIV
Human Immunodeficiency Virus
- HPV
Human Papillomavirus
- HR-HPV
High-Risk Human Papillomavirus
- IL
Interleukin
- iNOS
Inducible Nitric Oxide Synthase
- MPO
Myeloperoxidase
- PSA
Prostate-Specific Antigen
- TGF-β1
Transforming Growth Factor Beta 1
- TNF-α
Tumor Necrosis Factor Alpha
- VEGF
Vascular Endothelial Growth Factor
- Rb
Retinoblastoma
- CDK
Cyclin-dependent kinase
- ELISA
Enzymes linked immune absorbent assay
- PCR
Polymerase chain reaction
- DNA
Deoxyribose acid
- PRISMA
Referred Reporting Items for Systematic Reviews and Meta-Analyses
Authors’ contributions
SDT, RSD, IVF: Writing – original draft, Conceptualization, Investigation, Visualization, IJE, MEE, SAM: Writing– review & editing. RSD, CJ, AC: Validation, data analysis, CD, TSS: Writing – review & editing Supervision. IBA, PMA: Supervision, Proof reading, Writing– review & editing of the manuscript.
Funding
No specific funding issuing from public, commercial, or nonprofit groups for the work.
Data availability
Data Availability Statement The authors confirm that the data substantiating the conclusions of this investigation can be found in the present manuscript and its Supplementary Information files. If different formats of raw data files are required, they can be obtained from the respective author upon a fair request.
Declarations
Ethical approval and consent to participate
No Ethical approval was required for the work.
Consent for publication
Not applicable.
Competing interests
The authors declare no competing interests.
Footnotes
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
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Data Availability Statement
Data Availability Statement The authors confirm that the data substantiating the conclusions of this investigation can be found in the present manuscript and its Supplementary Information files. If different formats of raw data files are required, they can be obtained from the respective author upon a fair request.


