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. 2005 Jul 19;33(13):4016–4022. doi: 10.1093/nar/gki714

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© The Author 2005. Published by Oxford University Press. All rights reserved

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A neighbor-joining 16S rRNA-based phylogenetic tree constructed from the uncultured environmental bacterial sequences of Aquificae phylum. The topology shown is a consensus tree obtained after 100 bootstrap replicates. Bootstrap values >50% are shown at branch nodes. Arrows point to those thermophilic uncultured bacteria that do not have cultivated counterparts. Predicted T_opt of such bacteria range from 50 to 90°C (brackets). Cultivated representatives of the Aquificae phylum, highlighted in grey, are shown as phylogenetic reference points in the tree. [GenBank accession numbers of the uncultured bacterial sequences is provided in the bracket: BH81 (AF352537); VC2.1 Bac48 (AF068811); VC2.1 Bac2 (AF068784); SUBT-1 (AF361217); VC2.1 Bac23 (AF068799); VC2.1 Bac5 (AF068787); VC2.1 Bac3 (AF068785); pIce1 (AF301907); VC2.1 Bac34 (AF068808); CHA3-125 (AJ132734); pKA (AF453505); CHA3-117 (AJ132733); VC2.1 Bac13 (AF068793); env.OPS 5 (AF018190); VC2.1 Bac24 (AF068800); CHA3-27 (AJ132736); DGG36 (AY082371); FT17B14 (AY251061); Y04 (AF407675); R57 (AF407692); GAB-B01 (AB183857); CHA3-131 (AJ132735); VC2.1 Bac28 (AF068802); VC2.1 Bac10 (AF068791); env.OPS 6 (AF018191); Sed01 (AF407673); VC2.1 Bac27 (AF068801); VC2.1 Bac39 (AF068782); VC2.1 Bac33 (AF068807); VC2.1 Bac11 (AF068792); VC2.1 Bac16 (AF068794); pKB (AF453506); CH1_14f (AY672500); CH1_18 (AY672501); CH5_18 (AY672528); NAK9 (AB005737); NAK14 (AB005738); bacteriap28 (AF402979); pAz4 (AF453508); OPB13 (AF027098); env.OPS 14 (AF018196); env.OPS 4 (AF018189); env.OPS 7 (AF018192); YE12 (AB073124); env.OPS 1 (AF018186); pBB (AF113542); GANI 3 (AB005735); SM2G01 (AF445734); SM1B11 (AF445658); YUM915 (AB073130); env.OPS 10 (AF018194); YE111 (AB073123); SM2G04 (AF445736); pTthxG5 (AF453509); SM1G02 (AF445696); SM2G07 (AF445739); YE31422 (AB073127); SM1G03 (AF445697); YE3152 (AB073128); GW12 (AY559413); YE2921 (AB073126); GW1 (AY559410); Y4 (AY559409); Hydrogenobaculum acidophilum (D16296); Hydrogenobacter hydrogenophilus (Z30242); Thermocrinis albus (AJ278895); Aquifex aeolicus VF5 (AJ309733); Persephonella guaymasensis (AF385630).]