Table D.
Alu and Satellite Junction Enrichment, by Size of Duplication[Note]
|
Alu |
Satellite |
||||||||
| Junction |
Junction |
||||||||
| Alignmenta(kb) | N | Fraction(%) | No. | Control Fraction(%) | Enrichment | Fraction(%) | No. | Control Fraction(%) | Enrichment |
| 5 to <10 | 865 | 21.7 | 439 | 12.6 | 1.7-fold | 6.5 | 130 | 3.9 | 1.7-fold |
| 10 to <20 | 340 | 31.4 | 220 | 17.7 | 1.8-fold | 1.8 | 12 | 2.5 | .7-fold |
| 20 to <30 | 834 | 26.1 | 429 | 14.6 | 1.8-fold | 8.5 | 149 | 5.7 | 1.5-fold |
| 30 to <40 | 103 | 21.3 | 52 | 14.8 | 1.4-fold | 3.5 | 11 | 2.0 | 1.7-fold |
| 40 to <50 | 90 | 22.5 | 47 | 17.2 | 1.3-fold | 2.7 | 6 | .6 | 4.4-fold |
| 50+ | 134 | 13.0 | 45 | 11.2 | 1.2-fold | 3.9 | 14 | .7 | 5.3-fold |
Note.— The junction and control fraction were calculated separately for each bin, as described in table A (online only). For example, the control fraction for the 10–20-kb alignment considered the repeat content within this size range and ±1 kb of flanking sequence. The enrichment compares the relative repeat content of the junction with those of the control regions.
a
Categorized on the basis of length, in 5-kb increments.