Table E.

Alu and Satellite Junction Enrichment by Percent Identity of Alignment^[Note]

	Sequence Identity
	90% to <92%				92% to <94%				94% to <96%				96% to <98%				98% to 100%
	Junction				Junction				Junction				Junction				Junction
Repeat	Fraction(%)	No.	Control Fraction(%)	Enrichment	Fraction(%)	No.	Control Fraction(%)	Enrichment	Fraction(%)	No.	Control Fraction(%)	Enrichment	Fraction(%)	No.	Control Fraction(%)	Enrichment	Fraction(%)	No.	Control Fraction(%)	Enrichment
Alu	26.3	252	14.8	1.8-fold	22.4	282	12.5	1.8-fold	17.1	268	11.1	1.6-fold	30.1	310	16.2	1.9-fold	31.7	120	17.4	1.8-fold
Satellite	7.2	67	5.1	1.4-fold	12.2	146	8.0	1.5-fold	5.6	88	2.5	2.2-fold	1.1	19	.6	1.7-fold	.3	2	.3	1.0-fold

Note.— Alignments were categorized on the basis of the percent sequence identity. The junction and control fraction were calculated separately for each category of percent-identity, essentially as described in table A (online only). The enrichment compares the relative repeat content of the junction with those of the control regions.