Figure 2.

Alignment of seven phased chromosome-level genome assemblies of C. sativa. Each sequenced genotype is represented by 20 chromosomes phased into two haploid assemblies. Shading within each rectangle indicates the count of unique 31-mers aligned in 1 Mb bins across each assembled chromosome. Gray polygons with black borders connecting homologous chromosomes show pairwise alignments greater than 400 kb. For the two XY assemblies, GVA-H-21-1003-002 and GVA-H-22-1061-002, the Y chromosome is included in haplotype 2.