Table 1.
Silentb |
Replacement |
|||||
Samplea | No. of Chromosomes | No. of SNPs | πc | No. of SNPs | πc | hd |
African: | 163 | 67 | .21 | 9 | .60 | .87 |
West African: | 76 | 50 | .23 | 6 | .59 | .86 |
Sierra Leone | 18 | 36 | .24 | 4 | .50 | .79 |
Gambia | 15 | 38 | .25 | 4 | .58 | .89 |
Nigeria | 16 | 33 | .20 | 4 | .45 | .78 |
Cameroon | 13 | 36 | .22 | 6 | .70 | .94 |
Bakola Pygmiese | 14 | 29 | .21 | 4 | .50 | .88 |
East Africanf: | 71 | 45 | .19 | 9 | .62 | .88 |
Hadza | 16 | 30 | .20 | 5 | .61 | .89 |
Sandawe | 13 | 33 | .23 | 8 | .73 | .92 |
Maasai | 14 | 24 | .10 | 6 | .45 | .69 |
Turu | 13 | 27 | .22 | 6 | .74 | .94 |
Burunge | 15 | 32 | .21 | 6 | .52 | .78 |
Southern African (Bantu speakers) | 16 | 36 | .22 | 6 | .66 | .88 |
Non-African: | 73 | 36 | .12 | 9 | .55 | .81 |
Algeria (Berber) | 9 | 23 | .14 | 6 | .63 | .92 |
Tunisia | 9 | 27 | .19 | 4 | .51 | .81 |
Cyprus | 8 | 8 | .07 | 3 | .43 | .75 |
Lebanon | 10 | 8 | .05 | 3 | .42 | .82 |
Northern Europe | 10 | 20 | .14 | 7 | .84 | .84 |
Western Russia (Zversky) | 9 | 5 | .05 | 1 | .06 | .22 |
China (Han) | 9 | 9 | .05 | 2 | .21 | .56 |
Papua New Guinea | 9 | 8 | .05 | 3 | .27 | .69 |
Global | 236 | 74 | .19 | 9 | .61 | .86 |
Chimpanzee (P. troglodytes) | 6 | 10 | .09 | 0 | .00 | 0 |
African and non-African samples are described in the “Subjects and Methods” section.
Includes coding and noncoding regions.
Average pairwise sequence differences per bp (×10-2).
Amino acid haplotype diversity estimates, weighted by sample size.
Pygmies are from Southern Cameroon.
East Africans are from Tanzania.