Table 4.
Value for Total Sibship Size |
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3 Total, 2 Affected (80b) |
4 Total, 2 Affected (67b) |
4 Total, 3 Affected (83b) |
5 Total, 3 Affected (71b) |
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Model, Penetrances for Genotypes, KS (%),and Markera | Nad | Nad:Npairsc | Nad | Nad:Npairsc | Nad | Nad:Npairsc | Nad | Nad:Npairsc |
Recessive (q = .316): | ||||||||
DD = .08, Dd = .08, dd = .78, KS = 25.9: | ||||||||
M1 | 61 | .68 | 55 | .6 | 26 | .87 | 17 | .65 |
M2 | 92 | .68 | 81 | .58 | 38 | .86 | 25 | .66 |
DD = .10, Dd = .10, dd = .60, KS = 20.5: | ||||||||
M1 | 199 | .78 | 183 | .65 | 74 | 1 | 54 | .78 |
M2 | 299 | .78 | 269 | .66 | 111 | 1.03 | 78 | .79 |
DD = .12, Dd = .12, dd = .40, KS = 16.7: | ||||||||
M1 | 1,756 | .83 | 1,609 | .73 | 533 | 1.18 | 416 | .93 |
M2 | 2,819 | .81 | 2,430 | .72 | 801 | 1.2 | 640 | .92 |
DD = .13, Dd = .13, dd = .33, KS = 15.9: | ||||||||
M1 | 6,302 | .96 | 5,788 | .72 | 1,973 | 1.28 | 1,591 | .95 |
M2 | 9,640 | .97 | 8,365 | .72 | 2,983 | 1.3 | 2,341 | .93 |
Dominant (q = .0513): | ||||||||
DD = .08, Dd = .78, dd = .78, KS = 29.5: | ||||||||
M1 | 68 | .5 | 67 | .42 | 26 | .68 | 18 | .51 |
M2 | 102 | .5 | 98 | .42 | 38 | .66 | 27 | .51 |
DD = .10, Dd = .60, dd = .60, KS = 22.4: | ||||||||
M1 | 230 | .66 | 213 | .56 | 68 | .87 | 52 | .66 |
M2 | 344 | .66 | 328 | .57 | 99 | .86 | 76 | .64 |
DD = .12, Dd = .40, dd = .40, KS = 17.3: | ||||||||
M1 | 1,672 | .75 | 1,708 | .67 | 448 | 1.12 | 387 | .82 |
M2 | 2,622 | .72 | 2,436 | .65 | 657 | 1.11 | 584 | .82 |
DD = .13, Dd = .33, dd = .33, KS = 16.2: | ||||||||
M1 | 5,854 | .87 | 6,012 | .73 | 1,563 | 1.18 | 1314 | .93 |
M2 | 9,848 | .89 | 8,863 | .74 | 2,234 | 1.14 | 1,987 | .93 |
Additive (q = .1): | ||||||||
DD = .08, Dd = .43, dd = .78, KS = 22.4: | ||||||||
M1 | 241 | .78 | 193 | .67 | 98 | .98 | 70 | .77 |
M2 | 360 | .78 | 276 | .66 | 144 | .99 | 100 | .76 |
DD = .10, Dd = .35, dd = .60, KS = 18.8: | ||||||||
M1 | 743 | .82 | 635 | .72 | 273 | 1.13 | 211 | .85 |
M2 | 1,095 | .82 | 923 | .73 | 406 | 1.13 | 305 | .82 |
DD = .12, Dd = .26, dd = .40, KS = 16.1: | ||||||||
M1 | 6,534 | .94 | 6,316 | .79 | 1,873 | 1.22 | 1,585 | .94 |
M2 | 9,760 | .92 | 9,524 | .8 | 2,756 | 1.26 | 2,350 | .94 |
DD = .13, Dd = .23, dd = .33, KS = 15.6: | ||||||||
M1 | 21,369 | .9 | 20,561 | .85 | 8,562 | 1.32 | 5,163 | .91 |
M2 | 40,511 | .88 | 38,026 | .92 | 13,052 | 1.28 | 8,387 | .94 |
Note.— Parental genotypes are available. The nominal type I error is 0.1%. Parameters are estimated from at least 50,000 simulated replicates.
Penetrances are given in terms of the genotypes at the disease locus, where d is the susceptibility allele, with frequency q. KS is the sibling recurrence risk for the disease model. In all cases, the disease prevalence is 15%.
Percentage of individuals used by Spairs.
Ratio Nad:Npairs of the required number of pedigrees of a single type to achieve a power of 80% for the Sad statistic (Nad) and the Spairs statistic (Npairs), calculated at marker M1 and marker M2.