Table 6.
Power |
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Model, Penetrances for Genotypes, KS (%),and Markera | Spairs | Sad(one) | Sad(all) |
Recessive (q = .316): | |||
DD = .12, Dd = .12, dd = .40, KS = 16.7: | |||
M1 | .369 | .386 | .453 |
M2 | .300 | .272 | .337 |
DD = .13, Dd = .13, dd = .33, KS = 15.9: | |||
M1 | .099 | .103 | .098 |
M2 | .076 | .073 | .076 |
Dominant (q = .0513): | |||
DD = .12, Dd = .40, dd = .40, KS = 17.3: | |||
M1 | .313 | .371 | .439 |
M2 | .249 | .276 | .308 |
DD = .13, Dd = .33, dd = .33, KS = 16.2: | |||
M1 | .106 | .106 | .116 |
M2 | .086 | .085 | .097 |
Additive (q = .1): | |||
DD = .12, Dd = .26, dd = .40 KS = 16.1: | |||
M1 | .097 | .103 | .126 |
M2 | .080 | .066 | .087 |
DD = .13, Dd = .23, dd = .33, KS = 15.6: | |||
M1 | .037 | .046 | .038 |
M2 | .034 | .035 | .029 |
Note.— Power of Spairs and Sad under six different models, without TRD effects, for 400 ascertained sibships of various sizes. Two genotyping scenarios are considered: typing one unaffected sibling or all unaffected siblings. Parental genotypes are unavailable. Power is estimated at markers M1 and M2 from 1,000 simulated replicates, for a nominal level of 1%.
Penetrances are given in terms of the genotypes at the disease locus, where d is the susceptibility allele, with frequency q. KS is the sibling recurrence risk for the disease model. In all cases, the disease prevalence is 15%.