Skip to main content
. 2004 Sep 27;75(5):752–770. doi: 10.1086/425161

Table A3.

Sequence Polymorphisms that Define mtDNA Haplotypes Observed in Ethiopian and Yemeni Populations[Note]

Haplotype/Haplogroup 4350 4496 4577 NlaIII 4562 4586 4643 RsaI 4679 5096 BseGI 5262 AvaII 5579 NmuCI 5711 HincII 5811 5911 5999 6216 6260 BsuRI 6267 6284 6293 6296 DdeI 6386 6401 6614 6671 6956 7025 Alu I 7055 7055 AluI 7129 7146 7175 7256 7256 BseGI 7274 7278 7376 7521 7640 SacI 8104 8112 MspI 8150 MspI 8152
rCRS C C + A T − T − − − A C T T + G A T + C A T T T − A + A A T C + C T C G − T + + G
1 (preHV)1
2 (preHV)1 +
3 (preHV)1 +
4 (preHV)1 +
5 (preHV)1
6 (preHV)1 +
7 (preHV)1 + +
8 (preHV)1 +
9 (preHV)1
10 (preHV)1 +
11 (preHV)1 +
12 (preHV)1
13 (preHV)1 +
14 H + G A T + A T T + +
15 H + −
16 H −
17 H −
18 H −
19 HV* +
20 HV* + +
21 HV1 + T + A + A A T C + C T C
22 HV1 + +
23 HV1 + + +
24 J1a
25 J1a
26 J1c +
27 J1c
28 J2 G A T + A T C
29 J2 C
30 J2
31 L0(pre)a C C + A C C − C + + +
32 L0a* −
33 L0a* C C + A C T − − C + + +
34 L0a1 C C + A C T + − C G A T + A T T T + A + A G T T − C T C A + +
35 L0a1 + − C + +
36 L0a1 C C + A C T + − C + + + +
37 L0a1 C C + A C T + − C + + +
38 L0a1 C C + A C T + − C + + +
39 L0a1 C C + A C T + − C + + +
40 L0a1 C C + A C T + − C + + +
41 L0a2 C C + A C T − + + +
42 L0a2 C C + A C T + + A + +
43 L0a2
44 L0a2
45 L0f C C + G C T − + A
46 L0k G
47 L1b −
48 L1b −
49 L1b C C + A T T − − + +
50 L1b − A
51 L2a − T G A T + A T T
52 L2a C C + A T T − T
53 L2a −
54 L2a
55 L2a
56 L2a − T
57 L2a − T −
58 L2a1b2 C C + A T T − − T + T + A + A A C T − T T C A + +
59 L2a1b2 − T G A T + A T T
60 L2a1b2 −
61 L2a1b2 −
62 L2a1b2 −
63 L2a1b2 − T
64 L2a1b2 −
65 L2a1b2 −
66 L2a1b2 −
67 L2a1b2 −
68 L2a1a
69 L2a1a
70 L2a1c − T G A T + A T T
71 L2a1c − T
72 L2a1c − A
73 L2a1c − T
74 L2b
75 L2b G A C + A T T T + A + A A T T − C T C A + +
76 L2b
77 L2d1
78 L3b
79 L3d
80 L3d1 + G
81 L3d2 T + A + A A T C + C T C G
82 L3d2 +
83 L3e1 −
84 L3e3 +
85 L3e3 +
86 L3f* T + A + A A T C + C T C G
87 L3f* + G
88 L3f* T C + A T T + G
89 L3f* G
90 L3f*
91 L3f* T + A + A A T C + C C C G
92 L3f1 T + A + A A T C + C T C G
93 L3f1
94 L3f1
95 L3f1
96 L3f1
97 L3h
98 L3h T + A + A A T C + C T C G
99 L3h T + G − A A T C + C T C G
100 L3i +
101 L3i + G +
102 L3i T + A + A A T C + C T C G +
103 L3w T + A + A A T C + C T C G
104 L3w
105 L3w T + A + A A T C + C T C
106 L3w T + A + A A T C + C T C G
107 L3x1 G A T + G T T T + A + A A T C + C T C G + +
108 L3x1 G T + A + A A T C + C T C G
109 L3x1 G
110 L3x1 G
111 L3x1 G
112 L3x1 G T + A + A A T C + C T C G
113 L3x2 G T + A + A A T C + C T C G
114 L3x2 G T + A + A A T C + C T C
115 L3x2 G + +
116 L3x2 G T + A + G A T C + C T C G
117 L4a*
118 L4a*
119 L4a* + T + A + A A T C + C T C G
120 L4a1 + T + A + A A T C + C T T G
121 L4a1 + T + A + A A T C + C T T G + +
122 L4a1 +
123 L4a1 + +
124 L4a1 + T + A + A A T C + C T T G T
125 L4a1 +
126 L4a1 + T + A + A A T C + C T T
127 L4a1 +
128 L4a1 + T + A + A A T C + C T T
129 L4a1 +
130 L4a1
131 L4g + T + A + A A T C + C T C G
132 L4g C C + A T T + C + A + A A T C + C T C G
133 L4g + T + A + G A T C + C T C G
134 L4g + T + A + G A T C + C T C A C + +
135 L4g + + G
136 L4g + T + A + A A T C + C T C G
137 L4* C
138 L5a1 − + +
139 L5a1 C T + A T T − + + G
140 L5a1 C T + A T T − T + A + A A T T − C T C G
141 L5a2 C C + A T T − + T + A + A A T T − C T C A + + G
142 L5a2 C C + A T T − + + A
143 L5b C C + A T T − + − + −
144 L5b C C + A T T T + A + A A T T − C T C A + − A
145 L6
146 L6
147 L6 G + +
148 L6
149 L6 C C + A T T A G T + A T T G + +
150 M* +
151 M* +
152 M* +
153 M1
154 M1
155 M1
156 M1
157 M1
158 M1
159 M1
160 M1a
161 M1a
162 M1a
163 M1a
164 M1a
165 M1a +
166 M1a
167 M1a
168 M1a
169 M1a1
170 M1a1
171 M1a1
172 M1a1
173 M1b
174 M1b
175 M3* +
176 M3* +
177 M3a −
178 N1a
179 N1a
180 N1a
181 N1a
182 N1a
183 N1a
184 N1a
185 N1a
186 N1b
187 N1-I
188 N1-I
189 N1-I
190 R* +
191 R2 +
192 T(pre)2
193 T1 +
194 T1a
195 T1b
196 T2
197 T2
198 U1
199 U1 +
200 U2
201 U2 +
202 U2
203 U2b +
204 U2b
205 U3
206 U3
207 U3 +
208 U4 C +
209 U6a1
210 U6a1
211 U6a1
212 U6a1
213 U7
214 U9 C +
215 U9 − C T T + A + A A T C + C T C
216 K
217 K
218 K
219 K
220 K
221 K
222 K
223 K
224 K
225 W
226 W
227 W
228 X1
229 X1 T + A + A A T C + C T C
230 X2
231 X2

Note.— A plus sign (+) indicates presence of the restriction site; a minus sign (−) indicates the lack of the restriction site.