Table 1.
Target site duplications (TSDs) of the Dualen elements
| 5′ TSD | Element (5′-3′)a | 3′ TSDb |
| DualenCr1 7 TSDs | ||
| ATTGCGGGTGTC | TTCAT...GTAGAtattattattattatt | attGCGGGTGTC |
| TGTCAACCATGTC | CCCAG...GTAGAtattattattattttt | TGTCAACCATGTC |
| GGGGTG | AGCTT...GTAGAtattatttcatca | GGGGTG |
| TGTAGCAAGT | TATGG...GTAGAtattattattattattat | tGTAGCAAGT |
| CCGTGGAGCTGCC | TGGTG...GTAGAtattattattattatt | CCGTGGAGCTGCC |
| CTACCGTCCTCCTCG | ATGGT...GTAGAtattattattatta | CTACCGTCCTCCTCG |
| TTCTCCA | TCCGT...GTAGAtattattattatta | ttCTCCA |
| DualenCr2 15 TSDs | ||
| CATCTGGATGAC | TCTAC...GTGTCtctatttctatttctattt | cATCTGGATGAC |
| TTCACTCTGCCTGG | TCGTG...GTGTCtctatttctatttctat | ttcACTCTGCCTGG |
| CAGCCTGCCTGT | ATTGC...GTGTCtctatttctatttctattt | cAGCCTGCCTGT |
| TACAGCTAGAT | TCACA...GTGTCtctatttctatttctatttc | taCAGCTAGAT |
| CGTGGTGAGGT | AGTGG...GTGTAtctatttctatttctattt | cGTGGTGAGGT |
| TCACTCGCCTGGT | CGGTA...GTGTAtctatttctatttctatt | tcACTCGCCTGGT |
| CCCGGTT | GCTCG...GTGTAtctatctctatttctattctt | CCCGGTT |
| CAAACAATATCAC | GCTCG...GTGTAtctatttctatttctatttct | CAAACAATATCAC |
| TTCCAGATATTC | GGTAG...GTGTGtctatttctatttctgt | ttcCAGATATTC |
| TGCGCGCCACCG | GTAAT...GTGTCtctatttctatttctattct | TGCGCGCCACCG |
| CTAAACTTGTGGAT | GCTCG...GTGTAtctatttctatttctattt | ctaAACTTGTGGAT |
| TTTGGTTGGGCT | GAGTG...GTGTAtctatttctatttctatgt | TTTGGTTGGGCT |
| TTGCTCTTTGC | CTCGG...GTGTAtctgttttctatttcctatt | tTGCTCTTGC |
| TACCGTGTG | CCTGG...GTGTCtctatttctatttctatttc | taCCGTGTG |
| CGCCCTGCTGACCACTTGCCT | GCCTG...GTGTAtctatttctattt | cGCCCTGCTGACCACTTGCC |
| GCCACTCCACCGTGCTG | TGCCACTCCACCGTGCTG | |
| DualenCr3 5 TSDs | ||
| TTGCCACCGTTGTAG | ACATT...TTTGAattattattatta | ttGCCACCGTTGTAG |
| TGCAACTGCG | GTTAC...TTTGAattattattattatta | tGCAACTGCG |
| ATCAGCAACAGCAGCA | CTGCC...TTTGAattattattattatt | atCAGCAACAGCAGCA |
| TTCTTGCGGTCAGG | ATCCT...TTTGAattattattatta | ttCTTGCGGTCAGG |
| CCCTATGAAACACCA | CAGCT...TTTGAattattattatcat | CCCTATGAAACACCA |
| DualenCr4 6 TSDs | ||
| CCATCTACAAGATACCGGTAC | CGAAG...ACC—Attattattattatta | CCATCTACAAGATACCGGTA |
| GGTACTGCACCGGGTGCCGTC | CGGTACTGCACCGGGTGCCG | |
| CGG | TCCGG | |
| TTGCCCAGGACC | AACCG...AAC—Attaatatta | ttGCCCAGGACC |
| CTCCTGCTCCTGCT | CAGCG...ACC—Attatcattattattattattat | CTCCTGCTCCTGCT |
| TGCTGGACC | ATGCG...ACCTAttattattattat | tGCTGGACC |
| TCACAGCCCCAA | TTTGG...ACCTAttattattatca | tCACAGCCCCAA |
| TGACGCACAGGT | GCAGG...ACCTAttattattattattta | TGACGCACAGGT |
a
3′-terminal repeats are shown in lowercase.
b
Nucleotides that can be interpreted as either 3′-terminal repeats or TSDs are in lowercase.