Table 2.

Estimates (Based on 1,000 Replicated Samples) of the True Type I Error Rate of HS-TDT (AO1) in the Presence of Genotyping Errors for Nominal Type I Error α and for Three Different Options to Handle MIs

		Estimated True Type I Error Rate
		EO1		EO2		EO3
N	ɛ	α=.05	α=.01	α=.05	α=.01	α=.05	α=.01
100	.01	.576	.297	.471	.228	.540	.264
100	.005	.215	.079	.219	.075	.208	.075
200	.005	.389	.164	.393	.146	.383	.164
1,000	.001	.146	.039	.167	.045	.147	.039