TABLE 4.
Nucleotide sequence divergence identity and among certain group C virusesa
| Nucleotide sequence identity (%)
|
||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CARV
|
ITQV
|
MTBV
|
MURV
|
NEPV
|
ORIV
|
|||||||||||||||||||
| H190 863 | IQU 212 | Ar 299789 | H 5546 | An 3994* | An 346113 | An 12797* | An 258481 | Ar 186247 | H 119190 | An 15* | ITQ 9891 | IQU 126 | H 257944 | An 974* | An 10709 | An 275424 | Ar 225808 | TRVL 18462* | An 263748 | Ar 246614 | H 142102 | LCVP 217 | An 17* | |
| BeH 190 863 | 99.7 | 99.3 | 81.7 | 99.4 | 95.2 | 94.9 | 75.5 | 75.6 | 76.2 | 75.5 | 84.1 | 83.8 | 83.8 | 84.1 | 75.9 | 76.2 | 76.3 | 75.7 | 82.1 | 82.4 | 81.8 | 81.8 | 82.4 | |
| IQU 212 | 0.3 | 99.0 | 81.6 | 99.3 | 95.0 | 94.8 | 75.6 | 75.7 | 76.3 | 75.6 | 84.0 | 83.7 | 83.7 | 84.0 | 75.9 | 76.2 | 76.3 | 75.7 | 82.0 | 82.3 | 81.7 | 81.7 | 82.3 | |
| BeAr 299789 | 0.7 | 1.0 | 81.6 | 99.3 | 94.8 | 94.9 | 75.7 | 75.9 | 76.3 | 75.9 | 84.1 | 83.8 | 83.8 | 84.1 | 76.2 | 76.2 | 76.3 | 76.0 | 82.3 | 82.6 | 82.0 | 82.0 | 82.6 | |
| BeH 5546 | 21.2 | 21.3 | 21.4 | 82.1 | 80.9 | 81.4 | 81.3 | 81.6 | 81.3 | 81.4 | 93.6 | 93.5 | 93.3 | 93.9 | 83.7 | 83.8 | 83.8 | 84.0 | 95.9 | 96.5 | 95.2 | 95.2 | 96.5 | |
| BeAn 3994* | 0.6 | 0.7 | 0.7 | 20.6 | 95.0 | 95.0 | 75.6 | 75.9 | 76.0 | 75.6 | 84.3 | 84.0 | 84.0 | 84.3 | 76.0 | 76.3 | 76.5 | 75.9 | 82.4 | 82.7 | 82.1 | 82.1 | 82.7 | |
| BeAn 346113 | 5.0 | 5.1 | 5.4 | 22.2 | 5.1 | 98.9 | 75.0 | 75.3 | 75.0 | 75.0 | 82.4 | 82.3 | 82.1 | 82.3 | 75.7 | 75.9 | 75.9 | 75.5 | 80.4 | 81.0 | 80.3 | 80.3 | 81.0 | |
| BeAn 12797* | 5.3 | 5.5 | 5.3 | 21.5 | 5.2 | 1.1 | 74.9 | 75.2 | 74.9 | 74.9 | 82.7 | 82.6 | 82.4 | 82.6 | 75.6 | 75.7 | 75.7 | 75.3 | 80.9 | 81.4 | 80.7 | 80.7 | 81.4 | |
| BeAn 258481 | 30.0 | 29.8 | 29.5 | 21.7 | 29.8 | 30.6 | 30.8 | 99.6 | 99.0 | 99.6 | 80.3 | 80.7 | 80.1 | 80.3 | 90.4 | 90.2 | 90.5 | 90.9 | 81.3 | 81.6 | 81.7 | 81.7 | 81.6 | |
| BeAr 186247 | 29.8 | 29.6 | 29.3 | 21.3 | 29.3 | 30.1 | 30.3 | 0.4 | 99.3 | 99.4 | 80.4 | 80.6 | 80.0 | 80.7 | 90.4 | 90.2 | 90.5 | 90.9 | 81.6 | 81.8 | 82.0 | 82.0 | 81.8 | |
| BeH 119190 | 28.9 | 28.7 | 28.7 | 21.7 | 29.1 | 30.5 | 30.8 | 1.0 | 0.7 | 99.0 | 80.3 | 80.4 | 79.9 | 80.6 | 89.6 | 89.5 | 89.8 | 90.2 | 81.3 | 81.6 | 81.7 | 81.7 | 81.6 | |
| BeAn 15* | 30.0 | 29.8 | 29.3 | 21.5 | 29.8 | 30.6 | 30.8 | 0.4 | 0.6 | 1.0 | 80.1 | 80.4 | 80.0 | 80.3 | 90.5 | 90.4 | 90.6 | 91.1 | 81.6 | 81.8 | 82.0 | 82.0 | 81.8 | |
| ITQ 9891 | 17.9 | 18.1 | 17.9 | 6.7 | 17.7 | 20.1 | 19.7 | 23.2 | 23.0 | 23.2 | 23.3 | 99.6 | 99.6 | 98.7 | 81.8 | 81.8 | 81.8 | 82.0 | 94.6 | 95.2 | 93.9 | 93.9 | 95.2 | |
| IQU 126 | 18.3 | 18.4 | 18.3 | 6.9 | 18.1 | 20.3 | 19.9 | 22.6 | 22.8 | 23.0 | 23.0 | 0.4 | 99.4 | 98.6 | 82.0 | 82.0 | 82.0 | 82.1 | 94.6 | 95.2 | 93.9 | 93.9 | 95.2 | |
| BeH 257944 | 18.3 | 18.4 | 18.3 | 7.0 | 18.1 | 20.4 | 20.1 | 23.3 | 23.5 | 23.7 | 23.5 | 0.4 | 0.6 | 98.7 | 81.7 | 81.7 | 81.7 | 81.8 | 94.3 | 94.9 | 93.6 | 93.6 | 94.9 | |
| BeAn 974* | 17.9 | 18.1 | 17.9 | 6.4 | 17.7 | 20.3 | 19.9 | 23.1 | 22.5 | 22.7 | 23.1 | 1.3 | 1.4 | 1.3 | 82.0 | 82.0 | 82.0 | 82.1 | 94.9 | 95.5 | 94.2 | 94.2 | 95.5 | |
| BeAn 10709 | 29.3 | 29.3 | 28.8 | 18.5 | 29.1 | 29.4 | 19.6 | 10.4 | 10.4 | 11.2 | 10.2 | 20.9 | 20.7 | 21.1 | 20.7 | 99.4 | 98.9 | 99.1 | 83.3 | 83.7 | 83.4 | 83.4 | 83.7 | |
| BeAn 275424 | 28.9 | 28.9 | 28.8 | 18.3 | 28.7 | 29.3 | 29.4 | 10.5 | 10.5 | 11.4 | 10.4 | 20.9 | 20.7 | 21.1 | 20.7 | 0.6 | 99.1 | 99.0 | 83.1 | 83.5 | 83.3 | 83.3 | 83.5 | |
| BeAr 225808 | 28.7 | 28.7 | 28.7 | 18.3 | 28.5 | 29.3 | 29.5 | 10.2 | 10.2 | 11.0 | 10.0 | 20.9 | 20.7 | 21.1 | 20.7 | 1.1 | 0.9 | 99.3 | 83.1 | 83.5 | 83.3 | 83.3 | 83.5 | |
| TRVL 18462* | 29.6 | 29.6 | 29.1 | 18.1 | 29.3 | 29.9 | 30.1 | 9.7 | 9.7 | 10.5 | 9.5 | 20.7 | 20.5 | 20.9 | 20.5 | 0.9 | 1.0 | 0.7 | 83.5 | 84.0 | 83.7 | 83.7 | 84.0 | |
| BeAn 263748 | 20.5 | 20.7 | 20.3 | 4.2 | 20.1 | 22.8 | 22.2 | 21.8 | 21.4 | 21.8 | 21.4 | 5.6 | 5.6 | 5.9 | 5.3 | 19.0 | 19.2 | 19.2 | 18.7 | 99.4 | 99.1 | 99.1 | 99.4 | |
| BeAr 246614 | 20.1 | 20.3 | 19.9 | 3.6 | 19.7 | 22.0 | 21.4 | 21.4 | 21.0 | 21.4 | 21.0 | 5.0 | 5.0 | 5.3 | 4.7 | 18.5 | 18.7 | 18.7 | 18.1 | 0.6 | 98.6 | 98.6 | 99.1 | |
| BeH 142102 | 20.9 | 21.1 | 20.7 | 5.0 | 20.5 | 23.0 | 22.4 | 21.2 | 20.8 | 21.2 | 20.8 | 6.4 | 6.4 | 6.7 | 6.1 | 18.8 | 19.0 | 19.0 | 18.5 | 0.9 | 1.4 | 99.4 | 98.6 | |
| LCVP 217 | 20.9 | 21.1 | 20.7 | 5.0 | 20.5 | 23.0 | 22.4 | 21.2 | 2.8 | 21.2 | 20.8 | 6.4 | 6.4 | 6.7 | 6.1 | 18.8 | 19.0 | 19.0 | 18.5 | 0.9 | 1.4 | 0.6 | 98.6 | |
| BeAn 17* | 20.1 | 20.3 | 19.9 | 3.6 | 19.7 | 22.0 | 21.4 | 21.4 | 21.0 | 21.4 | 21.0 | 5.0 | 5.0 | 5.3 | 4.7 | 18.5 | 18.7 | 18.7 | 18.1 | 0.6 | 0.6 | 1.4 | 1.4 | |
a
Values in the top right half of the data field represent nucleotide sequence identity, and values in the bottom left half represent nucleotide sequence divergence. *, prototype viruses. Underlined values indicate nucleotide sequence identities (top half) and italicized values represent amino acid sequence identities (bottom half) among each virus and its respective strains; bold underlined values represent homology among strain BeH 5546 and strains of CARV; bold italicized values represent identities among strain BeH 5546 and strains of ORIV.