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. 2005 Aug 8;33(14):4496–4506. doi: 10.1093/nar/gki730

Figure 5.

Figure 5

Test protocol 3—energy optimization through discrete amplitude scanning along low frequency normal modes. Bars in each group indicate the initial cRMS value (shaded) followed by refinement with 1–5 normal modes. Scanning provides a better alternative than minimization along the normal mode eigenvectors, but is still somewhat unstable.