Table 1.
The most abundantly represented ESTs in the S. moellendorffii cDNA library.
| Cluster | Number of ESTs | Top BLASTX hit in non-redundant protein database | |||
| Accession Number | Best Identity Description | E-value | |||
| 1 | SmoC-1_cn126 | 105 | - | Novel | - |
| 2 | SmoC-1_cn125 | 46 | - | Novel | - |
| 3 | SmoC-1_cn018 | 31 | SP:P16031 | Ribulose bisphosphate carboxylase small subunit) [Larix laricina] | 8E-51 |
| 4 | SmoC-1_cn121 | 25 | SP:P04669 | Ferredoxin, chloroplast precursor [Silene latifolia subsp. alba] | 2E-26 |
| 5 | SmoC-1_cn106 | 17 | PIR:S16294 | chlorophyll a/b-binding protein [Lycopersicon esculentum] | 9E-99 |
| 6 | SmoC-1_cn107 | 17 | GB:AAM46780 | latex plastidic aldolase-like protein [Hevea brasiliensis] | 1E-164 |
| 7 | SmoC-1_cn171 | 17 | PIR:S31863 | chlorophyll a/b-binding protein [Pinus sylvestris] | 1E-106 |
| 8 | SmoC-1_cn011 | 14 | GB:AAC78107 | photosystem-1 H subunit GOS5 [Oryza sativa] | 8E-30 |
| 9 | SmoC-1_cn233 | 13 | SP:Q9SXW9 | Plastocyanin, chloroplast precursor [Physcomitrella patens] | 2E-37 |
| 10 | SmoC-1_cn025 | 11 | SP:P51118 | glutamine synthetase cytosolic isoenzyme 1 [Vitis vinifera] | 1E-152 |
| 11 | SmoC-1_cn089 | 11 | GB:AAG17036 | S-adenosylmethionine synthetase [Pinus contorta] | 7E-17 |
| 12 | SmoC-1_cn195 | 11 | SP:P11432 | Early light-induced protein, chloroplast precursor (ELIP) [Pisum sativum] | 1E-32 |
| 13 | SmoC-1_cn023 | 9 | SP:P82977 | Subtilisin-chymotrypsin inhibitor [Triticum aestivum] | 4E-11 |
| 14 | SmoC-1_cn145 | 9 | - | Novel | - |
| 15 | SmoC-1_cn179 | 9 | SP:P30361 | Cytochrome B6-F complex iron-sulfur subunit 1, chloroplast precursor [Nicotiana tabacum] | 3E-74 |
| 16 | SmoC-1_cn189 | 9 | - | Novel | - |
| 17 | SmoC-1_cn006 | 8 | GB:AAG59875 | PSII subunit PsbW [Physcomitrella patens] | 5E-13 |
| 18 | SmoC-1_cn078 | 8 | SP:O48560 | Catalase 3 [Glycine max] | 0 |
| 19 | SmoC-1_cn211 | 8 | SP:P23993 | Photosystem I reaction center subunit XI, chloroplast precursor [Hordeum vulgare] | 2E-55 |
| 20 | SmoC-1_cn226 | 8 | PDB:1EKJA | Carbonic Anhydrase [Pisum Sativum] | 2E-63 |
| 21 | SmoC-1_cn019 | 7 | REF:NP_175963 | photosystem I reaction center subunit V, chloroplast, [Arabidopsis thaliana] | 2E-34 |
| 22 | SmoC-1_cn108 | 7 | PIR:T23512 | hypothetical protein K08H10.2a [Caenorhabditis elegans] | 1E-12 |
| 23 | SmoC-1_cn215 | 7 | GB:AAB88617 | ubiquitin conjugating enzyme [Zea mays] | 3E-82 |
| 24 | SmoC-1_cn218 | 7 | SP:P27494 | Chlorophyll a-b binding protein 36, chloroplast precursor [Nicotiana tabacum] | 1E-127 |
| 25 | SmoC-1_cn013 | 6 | PIR:T06471 | core protein [Pisum sativum] | 1E-20 |
| 26 | SmoC-1_cn016 | 6 | SP:Q9SLQ8 | Oxygen-evolving enhancer protein 2, chloroplast precursor [Cucumis sativus] | 1E-79 |
| 27 | SmoC-1_cn033 | 6 | GB:AAM97011 | expressed protein [Arabidopsis thaliana] | 6E-40 |
| 28 | SmoC-1_cn136 | 6 | GB:AAO49652 | photosystem I-N subunit [Phaseolus vulgaris] | 2E-37 |
| 29 | SmoC-1_cn139 | 6 | DBJ:BAC66946 | chloroplastic iron superoxide dismutase [Barbula unguiculata] | 3E-69 |
| 30 | SmoC-1_cn180 | 6 | EMB:CAB71293 | chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] | 1E-139 |
| 31 | SmoC-1_cn208 | 6 | SP:P54773 | Photosystem II 22 kDa protein, chloroplast precursor [Lycopersicon esculentum] | 5E-61 |
| 32 | SmoC-1_cn250 | 6 | - | Novel | - |
Non-redundant protein database includes all non-redundant GenBank CDS translations (GB)+ RefSeq Proteins (REF) +PDB + SwissProt (SP) + PIR + PRF. The identities of ESTs were putatively described by the top BLASTX hit (with lowest E-value) of the assembled EST contigs.