Table 2.
Description of partially characterized, novel and putative snoRNAs, detected by the SNO.pl program
| snoRNA name (gene) | Species, chromosome | Intron identifier in MOID | Genomic location (within GenBank contig) | Putative targets for ASEs |
|---|---|---|---|---|
| MBII-316 (KIAA0007) | Hs, chr 2 | INTRON_5 2295_NT_022184 | NT_022184 (7952461..7952549) | AS1: gagtcgggg 28S rRNA (3 G–T) (1340–1348) |
| AS2: cacagccaaggga 28S rRNA (1 G–T) (3843–3855) | ||||
| Mm, chr 17 | INTRON_5 17444_NT_039658 | NT_039658 (5183792..5183880) | AS1? | |
| AS2: cacagccaaggga 28S rRNA (1 G–T) (3520–3532) | ||||
| Rn, chr 6 | INTRON_5 7091_NW_047756 | NW_047756 (comp6117735..6117827) | AS1: gagtcaggg 28S rRNA (2 G–T) (1252–1260) | |
| AS2: cacagccaaggga 28S rRNA (1 G–T) (3589–3601) | ||||
| MBII-295 (MNAB) | Hs, chr 9 | INTRON_4 9675_NT_008470 | NT_008470 (comp32963706..32963791) | AS1: gtctgccctat 18S rRNA (1 G–T) (351–361) |
| Mm, chr 2 | INTRON_7 1548_NT_039206 | NT_039206 (comp14828672..14828757) | AS1: gtctgccctat 18S rRNA (1 G–T) (352–362) | |
| Rn, chr 3 | INTRON_5 3929_NW_047653 | NW_047653 (comp3192607..3192692) | AS1: gtctgccctat 18S rRNA (1 G–T) (353–363) | |
| MBII-166 (ch-TOG) | Hs, chr 11 | INTRON_30 11040_NT_009237 | NT_009237 (comp45571179..45571289) | AS1: tggcccttg 28S rRNA (1 G–T) (2721–2729) |
| Mm, chr 2 | INTRON_31 1817_NT_039207 | NT_039207 (32430849..32430959) | AS1: tggcccttg 28S rRNA (1 G–T) (2487–2495) | |
| Rn, chr 3 | INTRON_27 4231_NW_047657 | NW_047657 (17383684..17383793) | AS1: tggcccttg 28S rRNA (1 G–T) (2575–2583) | |
| MBII-82 (SF3B3) | Hs, chr 16 | INTRON_6 15357_NT_010498 | NT_010498 (24186109..24186198) | AS1: gaagagacatgaga 28S rRNA (1 G–T) (3920–3933) |
| Mm, chr 8 | INTRON_6 9497_NT_078575 | NT_078575 (comp35865888..35865972) | AS1: gaagagacatgag 28S rRNA (1 G–T) (3597–3609) | |
| Rn, chr 19 | INTRON_2 16923_NW_047536 | NW_047536 (comp3195818..3195902) | AS1: gaagagacatgag 28S rRNA (2 G–T) (3666–3678) | |
| MBII-115 (GLTSCR2) | Hs, chr 19 | INTRON_10 17981_NT_011109 | NT_011109 (20527299..20527410) | AS2? |
| Mm, chr 7 | INTRON_10 7232_NT_039395 | NT_039395 (comp177705..177815) | AS2: ccccgggcg 28S rRNA (2 G–T) (1022–1030) | |
| Rn, chr 1 | INTRON_10 500_NW_047555 | NW_047555 (comp21675179..21675289) | AS2: ccccgggcg 28S rRNA (2 G–T) (1086–1084) | |
| MBII-55 (NOL5A) | Hs, chr 20 | INTRON_3 18370_NT_011387 | NT_011387 (2574856..2574934) | AS1: ggattgacagatt 18S rRNA (0 G–T) (1285–1297) |
| Mm, chr 2 | INTRON_2 2112_NT_039207 | NT_039207 (70965250..70965321) | AS1: ggattgacagat 18S rRNA (0 G–T) (1285–1296) | |
| Rn, chr 3 | INTRON_3 4524_NW_047658 | NW_047658 (8066063..8066135) | AS1: ggattgacagatt 18S rRNA (0 G–T) (1289–1301) | |
| Novel 1 (KIAA0007) | Hs, chr 2 | INTRON_11 2295_NT_022184 | NT_022184 (7966780..7966861) | AS2: cagccaagggaa 28S rRNA (1G–T) (3845–3856) |
| Mm, chr 17 | INTRON_11 17444_NT_039658 | NT_039658 (5194095..5194174) | AS2: cagccaagggaa 28S rRNA (1G–T) (3522–3533) | |
| Rn, chr 6 | INTRON_12 7091_NW_047756 | NW_047756 (comp6107760..6107839) | AS2: cagccaagggaa 28S rRNA (1G–T) (3591–3602) | |
| Putative 1 (LOC131368) | Hs, chr 3 | INTRON_5 4087_NT_005612 | NT_005612 (8672246..8672320) | ? |
| Mm, chr 16 | INTRON_6 16457_NT_096987 | NT_096987 (comp20526051..20526125) | ? | |
| Rn, chr 11 | INTRON_7 12205_NW_047355 | NW_047355 (9207232..9207306) | ? | |
| Putative 2 (APTX) | Hs, chr 9 | INTRON_5 9220A_NT_008413 | NT_008413 (comp32977364..32977439) | AS1: ccatgaacgag 18S rRNA (3 G–T) (1627–1637) |
| Mm, chr 4 | INTRON_4 3776_NT_039260 | NT_039260 (comp15064752..15064844) | AS1: ccatgaacgag 18S rRNA (3 G–T) (1627–1637) | |
| Rn, chr 5 | INTRON_4 6027_NW_047711 | NW_047711 (comp32384161..32384253) | AS1: ccatgaacgag 18S rRNA (3 G–T) (1627–1637) | |
| Putative 3 (AP4E1) | Hs, chr 15 | INTRON_15 14222_NT_010194 | NT_010194 (22053882..22053953) | ? |
| Mm, chr 2 | INTRON_15 2063_NT_039207 | NT_039207 (67744852..67744930) | ? | |
| Rn, chr 3 | INTRON_4 4479_NW_047658 | NW_047658 (4776101..4776177) | ? |
The first column represents names of partially characterized snoRNAs followed by the GenBank identifier of the human gene inside which snoRNAs were found. The last column represents putative targets for snoRNA ASEs that were detected by the program TARGET.pl. The number of non-WC G–T pairs is shown in parentheses followed by the position of the target within the rRNA sequence. Cases in which no ASE targets were detected are denoted by ‘?’.