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. 2005 Aug 12;33(14):4563–4577. doi: 10.1093/nar/gki767

Figure 5.

Figure 5

High-level outline of our algorithm for decoding the profile. The algorithm we use for decoding the probabilistic profile into a set of regions consists of a series of recursive stages. At each level, we choose to partition the portion of the profile shown in black into two different region classes that differ either in Ppresent¯ or Pid¯. We then recursively split each of the two classes until we have partitioned the profile into enough different region classes.