Table 1. Genome data for Aporia crataegi, ilApoCrat1.1.
| Project accession data | |
|---|---|
| Assembly identifier | ilApoCrat1.1 |
| Species | Aporia crataegi |
| Specimen | ilApoCrat1 (genome assembly); ilApoCrat2 (RNA-Seq) |
| NCBI taxonomy ID | NCBI:txid129397 |
| BioProject | PRJEB45674 |
| BioSample ID | SAMEA7523355 |
| Isolate information | Male, whole organism (ilApoCrat1); male, thorax (ilApoCrat2) |
| Raw data accessions | |
| PacificBiosciences SEQUEL II | ERR6544652 (2.3 million reads, 24.82 gigabases) |
| 10X Genomics Illumina | ERR6363316-ERR6363319 (480 million reads, 72.47 gigabases) |
| Hi-C Illumina | ERR6363321 (740.32 million reads, 111.79 gigabases) |
| Illumina polyA RNA-Seq | ERR6363320 (40.39 million reads, 6.1 gigabases) |
| Genome assembly | |
| Assembly accession | GCA_912999735.1 |
| Accession of alternate haplotype | GCA_912999795.1 |
| Span (Mb) | 230 |
| Number of contigs | 28 |
| Contig N50 length (Mb) | 9.6 |
| Number of scaffolds | 26 |
| Scaffold N50 length (Mb) | 9.6 |
| Longest scaffold (Mb) | 12.8 |
| BUSCO * genome score | C:98.5%[S:97.8%,D:0.6%],F:0.3%,M:1.2%,n:5286 |
| Genome annotation | |
| Number of protein-coding genes | 10,860 |
| Average length of coding sequence (bp) | 1597.20 |
| Average number of exons per transcript | 8.23 |
| Average exon size (bp) | 259.64 |
| Average intron size (bp) | 1337.70 |
*BUSCO scores based on the lepidoptera_odb10 BUSCO set using v5.1.2. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/ilApoCrat1.1/dataset/ilApoCrat1_1/busco.