Table 3.
Top 10 RKO cell proteins with 6 or more peptides displayed on MHC I. Also shown are total number of peptides from each protein, number unique to treated cells, and number of peptides cross-presented on SW620 cells, and if unique peptide from same protein is displayed by SW620.
| Cell line | Protein (Accession #) | Mol. Mass (kDa) | # of peptides identified | # of Rx-restricted peptides | # of Cross-presented peptides | Unique peptide from Protein is presented by other cell line |
|---|---|---|---|---|---|---|
| RKO | HS71A (P0DMV8) | 70 | 19 | 14 | 2 | yes |
| HS90B (P08238) | 84 | 19 | 9 | 4 | yes | |
| TBA1C (Q9BQE3) | 50 | 10 | 8 | 1 | yes | |
| ENOA (P06733) | 47 | 9 | 4 | 1 | no | |
| EF2 (P13639) | 95.3 | 8 | 6 | 0 | yes | |
| CH60 (P10809) | 61 | 8 | 5 | 0 | no | |
| RS3 (P23396) | 26.7 | 8 | 5 | 0 | no | |
| TCAF1 (Q9Y4C2) | 102 | 8 | 3 | 0 | yes | |
| VIME (P08670) | 53.6 | 7 | 7 | 0 | yes | |
| TBB4b (P68371) | 49.8 | 7 | 4 | 0 | yes |